C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023018 Smarcd1 10090 + 15:99702287-99713995 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000023759 Smarcd1-201 99702287-99713995 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023759
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023759 12.364±3.95 39.620±4.25 9.443±1.08 55.905±22.74 14.376±3.63 7.443±1.31 15.526±0.54 9.712±1.97 4.215±2.39 14.888±1.23 2.180±0.51 23.028±5.86 11.933±4.02 10.705±4.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0002 VISTA 15:99507076-100109694
CIL_0008CC CIL_0008CC_0002 VISTA 15:99507743-100109214
CIL_0000F4 CIL_0000F4_0002 CGP 15:99702287-99725005

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006337 IEA nucleosome disassembly
GO:0006338 IEA chromatin remodeling
GO:0007399 IEA nervous system development
GO:0016514 IEA SWI/SNF complex
GO:0032947 IEA protein complex scaffold
GO:0048096 IEA chromatin-mediated maintenance of transcription
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019004 smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 protein_coding Danio_rerio
ENSG00000066117 SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 protein_coding Homo_sapiens

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