C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000F4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000066117-ENSG00000167588 CGP 9606 12:50084972-50111319
GeneTranscriptPositionBiotype
ENSG00000066117 (SMARCD1)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 		ENST00000381513 (SMARCD1-002) 50085200-50100642 protein_coding
ENST00000394963 (SMARCD1-001) 50084972-50100712 protein_coding
ENST00000547247 (SMARCD1-003) 50085342-50089422 retained_intron
ENST00000547637 (SMARCD1-005) 50085353-50086917 retained_intron
ENST00000548573 (SMARCD1-012) 50088235-50100149 protein_coding
ENST00000549274 (SMARCD1-008) 50094506-50099844 nonsense_mediated_decay
ENST00000549526 (SMARCD1-009) 50099430-50100318 processed_transcript
ENST00000550280 (SMARCD1-006) 50096659-50099097 retained_intron
ENST00000550477 (SMARCD1-010) 50085328-50090566 protein_coding
ENST00000551352 (SMARCD1-007) 50098495-50099246 retained_intron
ENST00000551497 (SMARCD1-004) 50085683-50086872 protein_coding
ENST00000551966 (SMARCD1-011) 50085325-50090326 protein_coding
ENSG00000167588 (GPD1)
glycerol-3-phosphate dehydrogenase 1 (soluble) 		ENST00000301149 (GPD1-001) 50103819-50111319 protein_coding
ENST00000547190 (GPD1-007) 50104008-50108108 processed_transcript
ENST00000547964 (GPD1-003) 50103982-50106387 nonsense_mediated_decay
ENST00000548152 (GPD1-004) 50104347-50107513 processed_transcript
ENST00000548814 (GPD1-002) 50104008-50110086 protein_coding
ENST00000550172 (GPD1-005) 50105146-50106916 retained_intron
ENST00000551939 (GPD1-006) 50104008-50106042 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0000F4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000023018-ENSMUSG00000023019 CGP 10090 15:99702287-99725005
GeneTranscriptPositionBiotype
ENSMUSG00000023018 (Smarcd1)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 		ENSMUST00000023759 (Smarcd1-201) 99702287-99713995 protein_coding
ENSMUSG00000023019 (Gpd1)
glycerol-3-phosphate dehydrogenase 1 (soluble) 		ENSMUST00000023760 (Gpd1-001) 99717515-99725005 protein_coding
ENSMUST00000161768 (Gpd1-003) 99719996-99722047 retained_intron
ENSMUST00000162194 (Gpd1-002) 99717579-99723792 protein_coding
ENSMUSG00000089671 (Gm16537)
predicted gene 16537 		ENSMUST00000161529 (Gm16537-001) 99715543-99724474 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000F4_0001ENSG00000066117ENST00000381513ENST00000394963ENST00000547247ENST00000547637ENST00000548573ENST00000549274ENST00000549526ENST00000550280ENST00000550477ENST00000551352ENST00000551497ENST00000551966ENSG00000167588ENST00000301149ENST00000547190ENST00000547964ENST00000548152ENST00000548814ENST00000550172ENST00000551939CIL_0000F4_0002ENSMUSG00000023018ENSMUST00000023759ENSMUSG00000023019ENSMUST00000023760ENSMUST00000161768ENSMUST00000162194ENSMUSG00000089671ENSMUST00000161529
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000F4_0001ENSG00000066117ENST00000381513ENST00000394963ENST00000547247ENST00000547637ENST00000548573ENST00000549274ENST00000550477ENSG00000167588ENST00000301149ENST00000547190ENST00000547964ENST00000548814ENST00000550172CIL_0000F4_0002ENSMUSG00000023018ENSMUST00000023759ENSMUSG00000023019ENSMUST00000023760ENSMUST00000162194ENSMUSG00000089671ENSMUST00000161529
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000066117 ENST00000381513 7.184±0.00 7.079±0.00 0.278±0.00 3.275±1.85 5.342±0.00 4.034±0.00 2.626±0.00 8.084±0.00 2.076±1.45 5.505±0.00 4.207±0.00 3.513±0.25 6.469±1.55 9.665±0.00
ENST00000394963 3.333±0.00 2.961±0.00 N/A 1.079±0.51 1.426±0.69 1.169±0.00 0.993±0.81 N/A 0.318±0.00 1.687±0.00 N/A 6.718±3.39 7.246±0.83 4.318±0.00
ENST00000547247 N/A N/A 0.546±0.00 0.682±0.00 1.375±0.00 N/A 0.599±0.00 0.856±0.00 0.512±0.00 0.882±0.00 N/A N/A N/A N/A
ENST00000547637 N/A N/A 2.168±0.00 N/A N/A 3.463±0.00 N/A 1.322±0.00 N/A N/A N/A N/A N/A N/A
ENST00000548573 7.155±0.00 10.206±0.00 N/A 4.983±0.00 4.071±2.84 3.184±0.96 0.921±0.60 8.908±0.00 N/A 3.391±0.00 N/A 8.430±2.04 5.327±1.01 9.443±0.62
ENST00000549274 N/A N/A N/A N/A N/A N/A N/A 2.140±0.00 N/A N/A N/A 18.469±0.00 13.035±0.00 9.735±0.00
ENST00000549526 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550477 N/A N/A N/A N/A 1.647±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551966 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000167588 ENST00000301149 113.391±0.00 0.398±0.00 3.713±0.00 2.841±1.32 228.724±222.05 1.697±0.00 2.625±0.05 14.271±0.65 23.512±17.59 3.551±2.56 29.230±8.19 0.151±0.15 0.037±0.00 0.159±0.00
ENST00000547190 N/A N/A N/A 2.187±0.00 6.312±0.00 N/A 5.410±0.00 N/A 6.422±0.00 7.451±0.00 N/A 0.306±0.21 N/A N/A
ENST00000547964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.227±0.00 0.095±0.00 N/A
ENST00000548152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548814 49.380±0.00 N/A N/A 2.985±1.25 108.684±101.82 6.314±0.00 2.985±0.00 11.448±4.03 6.156±0.00 3.252±0.26 36.430±0.00 0.284±0.13 0.086±0.05 0.334±0.00
ENST00000550172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.084±0.00 N/A N/A
ENST00000551939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000023018 ENSMUST00000023759 12.364±3.95 39.620±4.25 9.443±1.08 55.905±22.74 14.376±3.63 7.443±1.31 15.526±0.54 9.712±1.97 4.215±2.39 14.888±1.23 2.180±0.51 23.028±5.86 11.933±4.02 10.705±4.32
ENSMUSG00000023019 ENSMUST00000023760 418.325±117.07 399.948±90.28 6.309±1.14 5.207±5.50 366.510±141.17 11.428±3.42 57.252±18.91 193.872±16.36 74.414±58.12 41.221±10.47 270.094±12.31 27.847±11.30 0.892±1.15 7.036±2.13
ENSMUST00000161768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162194 N/A N/A N/A N/A N/A 7.155±1.58 N/A N/A N/A N/A N/A N/A 0.050±0.00 N/A
ENSMUSG00000089671 ENSMUST00000161529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.377±0.00 N/A

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