C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000066117 SMARCD1 9606 + 12:50084972-50100712 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000381513 SMARCD1-002 50085200-50100642 protein_coding
  ENST00000394963 SMARCD1-001 50084972-50100712 protein_coding
  ENST00000547247 SMARCD1-003 50085342-50089422 retained_intron
  ENST00000547637 SMARCD1-005 50085353-50086917 retained_intron
  ENST00000548573 SMARCD1-012 50088235-50100149 protein_coding
  ENST00000549274 SMARCD1-008 50094506-50099844 nonsense_mediated_decay
  ENST00000549526 SMARCD1-009 50099430-50100318 processed_transcript
  ENST00000550280 SMARCD1-006 50096659-50099097 retained_intron
  ENST00000550477 SMARCD1-010 50085328-50090566 protein_coding
  ENST00000551352 SMARCD1-007 50098495-50099246 retained_intron
  ENST00000551497 SMARCD1-004 50085683-50086872 protein_coding
  ENST00000551966 SMARCD1-011 50085325-50090326 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000381513ENST00000394963ENST00000547247ENST00000547637ENST00000548573ENST00000549274ENST00000550477
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000381513 7.184±0.00 7.079±0.00 0.278±0.00 3.275±1.85 5.342±0.00 4.034±0.00 2.626±0.00 8.084±0.00 2.076±1.45 5.505±0.00 4.207±0.00 3.513±0.25 6.469±1.55 9.665±0.00
ENST00000394963 3.333±0.00 2.961±0.00 N/A 1.079±0.51 1.426±0.69 1.169±0.00 0.993±0.81 N/A 0.318±0.00 1.687±0.00 N/A 6.718±3.39 7.246±0.83 4.318±0.00
ENST00000547247 N/A N/A 0.546±0.00 0.682±0.00 1.375±0.00 N/A 0.599±0.00 0.856±0.00 0.512±0.00 0.882±0.00 N/A N/A N/A N/A
ENST00000547637 N/A N/A 2.168±0.00 N/A N/A 3.463±0.00 N/A 1.322±0.00 N/A N/A N/A N/A N/A N/A
ENST00000548573 7.155±0.00 10.206±0.00 N/A 4.983±0.00 4.071±2.84 3.184±0.96 0.921±0.60 8.908±0.00 N/A 3.391±0.00 N/A 8.430±2.04 5.327±1.01 9.443±0.62
ENST00000549274 N/A N/A N/A N/A N/A N/A N/A 2.140±0.00 N/A N/A N/A 18.469±0.00 13.035±0.00 9.735±0.00
ENST00000550477 N/A N/A N/A N/A 1.647±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0001 VISTA 12:49905565-50507504
CIL_0008CC CIL_0008CC_0001 VISTA 12:49906068-50507455
CIL_0000F4 CIL_0000F4_0001 CGP 12:50084972-50111319

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003713 NAS transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA chromatin remodeling
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0016514 IDA SWI/SNF complex
GO:0032947 IDA protein complex scaffold
GO:0048096 IMP chromatin-mediated maintenance of transcription
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019004 smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 protein_coding Danio_rerio
ENSMUSG00000023018 Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 protein_coding Mus_musculus

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