C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023759 Smarcd1-201 ENSMUSG00000023018 10090 + 15:99702287-99713995 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023759
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023759 12.364±3.95 39.620±4.25 9.443±1.08 55.905±22.74 14.376±3.63 7.443±1.31 15.526±0.54 9.712±1.97 4.215±2.39 14.888±1.23 2.180±0.51 23.028±5.86 11.933±4.02 10.705±4.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PE CIL_0008PE_0002 VISTA 15:99507076-100109694
CIL_0008CC CIL_0008CC_0002 VISTA 15:99507743-100109214
CIL_0000F4 CIL_0000F4_0002 CGP 15:99702287-99725005

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0006337 IEA nucleosome disassembly
GO:0006338 IEA chromatin remodeling
GO:0007399 IEA nervous system development
GO:0016514 IEA SWI/SNF complex
GO:0032947 IEA protein complex scaffold
GO:0048096 IEA chromatin-mediated maintenance of transcription
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262188 SMARCD3-002 protein_coding Homo_sapiens 0 556
ENST00000356800 SMARCD3-201 protein_coding Homo_sapiens 0 556
ENST00000381513 SMARCD1-002 protein_coding Homo_sapiens 0 1912
ENST00000392811 SMARCD3-001 protein_coding Homo_sapiens 0 556
ENST00000394963 SMARCD1-001 protein_coding Homo_sapiens 0 2401
ENST00000469154 SMARCD3-004 nonsense_mediated_decay Homo_sapiens 0 281
ENST00000470588 SMARCD3-007 retained_intron Homo_sapiens 0 228
ENST00000547247 SMARCD1-003 retained_intron Homo_sapiens 0 1216
ENST00000547637 SMARCD1-005 retained_intron Homo_sapiens 0 850
ENST00000548573 SMARCD1-012 protein_coding Homo_sapiens 0 1347
ENST00000549274 SMARCD1-008 nonsense_mediated_decay Homo_sapiens 0 577
ENST00000549526 SMARCD1-009 processed_transcript Homo_sapiens 0 233
ENST00000550280 SMARCD1-006 retained_intron Homo_sapiens 0 470
ENST00000550477 SMARCD1-010 protein_coding Homo_sapiens 0 874
ENST00000551352 SMARCD1-007 retained_intron Homo_sapiens 0 311
ENST00000551497 SMARCD1-004 protein_coding Homo_sapiens 0 551
ENST00000551966 SMARCD1-011 protein_coding Homo_sapiens 0 874

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