C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromodomain helicase DNA binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024627 Chd1-001 ENSMUSG00000023852 10090 + 17:15704967-15772610 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024627
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024627 1.628±0.60 1.614±0.12 2.840±0.43 3.180±1.49 1.759±0.21 1.812±0.63 0.941±0.22 1.681±0.34 2.459±1.30 2.451±0.66 1.517±0.23 3.425±2.12 6.837±1.92 1.634±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DG CIL_0008DG_0002 VISTA 17:15140120-15741360

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 NAS chromatin binding
GO:0004386 NAS helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 NAS nucleus
GO:0005737 IEA cytoplasm
GO:0006333 NAS chromatin assembly or disassembly
GO:0006338 IGI chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0035064 IEA methylated histone binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000085727 CHD1-201 protein_coding Danio_rerio 0 1683
ENST00000284049 CHD1-201 protein_coding Homo_sapiens 0 7489
ENST00000505657 CHD1-006 nonsense_mediated_decay Homo_sapiens 0 315
ENST00000508756 CHD1-009 retained_intron Homo_sapiens 0 496
ENST00000511067 CHD1-008 protein_coding Homo_sapiens 0 318
ENST00000511628 CHD1-004 retained_intron Homo_sapiens 0 628
ENST00000512392 CHD1-003 retained_intron Homo_sapiens 0 1576
ENST00000512844 CHD1-005 nonsense_mediated_decay Homo_sapiens 0 863
ENST00000514344 CHD1-002 retained_intron Homo_sapiens 0 2922
ENST00000614616 CHD1-001 protein_coding Homo_sapiens 0 7559

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