C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SPARC related modular calcium binding 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023886 Smoc2 10090 + 17:14279506-14404790 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000024660 Smoc2-201 14279506-14404790 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024660
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024660 76.633±51.48 47.646±5.28 61.786±2.43 3.422±1.23 25.004±1.81 17.972±4.81 28.791±3.33 18.378±3.08 2.948±3.02 13.317±0.89 20.872±3.55 107.543±34.52 7.328±4.51 4.491±2.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VZ CIL_0004VZ_0002 CGP 17:14195231-14404790
CIL_0004W0 CIL_0004W0_0002 CGP 17:14279506-14694262

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005539 IDA glycosaminoglycan binding
GO:0005604 IDA basement membrane
GO:0005614 IDA interstitial matrix
GO:0007165 IEA signal transduction
GO:0008201 IDA heparin binding
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0030198 IDA extracellular matrix organization
GO:0031012 IDA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054766 SMOC2 (1 of 2) SPARC related modular calcium binding 2 protein_coding Danio_rerio
ENSDARG00000088157 SMOC2 (2 of 2) SPARC related modular calcium binding 2 protein_coding Danio_rerio
ENSG00000112562 SMOC2 SPARC related modular calcium binding 2 protein_coding Homo_sapiens

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