C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SPARC related modular calcium binding 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000112562 SMOC2 9606 + 6:168441151-168673445 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354536 SMOC2-002 168441151-168667994 protein_coding
  ENST00000356284 SMOC2-001 168441151-168667994 protein_coding
  ENST00000392100 SMOC2-004 168653045-168666503 nonsense_mediated_decay
  ENST00000417208 SMOC2-005 168653084-168665224 protein_coding
  ENST00000477998 SMOC2-003 168653203-168673445 processed_transcript
  ENST00000535039 SMOC2-201 168652959-168667991 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000354536ENST00000356284ENST00000535039
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000354536 3.768±0.00 2.347±0.00 N/A N/A 1.715±0.00 N/A 1.298±0.00 N/A N/A N/A 2.137±0.25 N/A 3.224±0.00 N/A
ENST00000356284 25.755±0.00 12.910±0.00 0.985±0.00 2.009±1.20 7.873±3.38 6.941±4.73 5.550±2.99 2.717±0.00 6.483±6.02 8.157±5.57 5.338±2.72 52.420±27.02 5.401±0.83 45.852±38.55
ENST00000535039 N/A N/A N/A N/A 2.585±0.00 6.485±0.00 N/A 2.298±0.00 0.327±0.00 N/A N/A 47.575±11.65 4.953±4.00 30.254±10.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VZ CIL_0004VZ_0001 CGP 6:168292830-168673445
CIL_0004W0 CIL_0004W0_0001 CGP 6:168441151-169254044

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005539 IEA glycosaminoglycan binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005604 IEA basement membrane
GO:0005614 IEA interstitial matrix
GO:0007165 IEA signal transduction
GO:0008201 IEA heparin binding
GO:0010811 IEA positive regulation of cell-substrate adhesion
GO:0030198 IEA extracellular matrix organization
GO:0031012 IEA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054766 SMOC2 (1 of 2) SPARC related modular calcium binding 2 protein_coding Danio_rerio
ENSDARG00000088157 SMOC2 (2 of 2) SPARC related modular calcium binding 2 protein_coding Danio_rerio
ENSMUSG00000023886 Smoc2 SPARC related modular calcium binding 2 protein_coding Mus_musculus

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