C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPARC related modular calcium binding 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024660 Smoc2-201 ENSMUSG00000023886 10090 + 17:14279506-14404790 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024660
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024660 76.633±51.48 47.646±5.28 61.786±2.43 3.422±1.23 25.004±1.81 17.972±4.81 28.791±3.33 18.378±3.08 2.948±3.02 13.317±0.89 20.872±3.55 107.543±34.52 7.328±4.51 4.491±2.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VZ CIL_0004VZ_0002 CGP 17:14195231-14404790
CIL_0004W0 CIL_0004W0_0002 CGP 17:14279506-14694262

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005539 IDA glycosaminoglycan binding
GO:0005604 IDA basement membrane
GO:0005614 IDA interstitial matrix
GO:0007165 IEA signal transduction
GO:0008201 IDA heparin binding
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0030198 IDA extracellular matrix organization
GO:0031012 IDA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354536 SMOC2-002 protein_coding Homo_sapiens 0 1075
ENST00000356284 SMOC2-001 protein_coding Homo_sapiens 0 1589
ENST00000361956 SMOC1-001 protein_coding Homo_sapiens 1e-20 106
ENST00000381280 SMOC1-002 protein_coding Homo_sapiens 5e-21 108
ENST00000535039 SMOC2-201 protein_coding Homo_sapiens 0 560

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