C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: special AT-rich sequence binding protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023927 Satb1 10090 - 17:51736187-51833290 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000124222 Satb1-008 51805363-51832019 protein_coding
  ENSMUST00000129205 Satb1-011 51804366-51821091 protein_coding
  ENSMUST00000129667 Satb1-003 51739455-51826566 protein_coding
  ENSMUST00000133574 Satb1-005 51738894-51833290 protein_coding
  ENSMUST00000137697 Satb1-009 51739988-51742266 retained_intron
  ENSMUST00000140727 Satb1-013 51802330-51809132 processed_transcript
  ENSMUST00000140979 Satb1-004 51739476-51812680 protein_coding
  ENSMUST00000144331 Satb1-001 51736187-51832672 protein_coding
  ENSMUST00000146414 Satb1-006 51807080-51810919 retained_intron
  ENSMUST00000148559 Satb1-010 51809189-51826588 protein_coding
  ENSMUST00000152830 Satb1-002 51739471-51815004 protein_coding
  ENSMUST00000156051 Satb1-007 51824641-51829497 retained_intron
  ENSMUST00000169480 Satb1-201 51736188-51826588 protein_coding
  ENSMUST00000176669 Satb1-012 51739452-51810919 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000129667ENSMUST00000133574ENSMUST00000140727ENSMUST00000140979ENSMUST00000144331ENSMUST00000152830ENSMUST00000169480ENSMUST00000176669
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000129667 2.156±1.09 5.366±1.28 4.312±1.42 8.315±2.44 10.851±4.78 2.186±0.46 2.583±0.20 0.726±0.25 0.338±0.19 2.369±0.34 N/A 9.866±2.57 1.375±1.05 0.417±0.10
ENSMUST00000133574 N/A N/A 3.792±0.30 4.462±0.20 N/A N/A N/A N/A 0.278±0.14 N/A 7.410±0.48 2.797±1.10 1.421±0.92 0.137±0.06
ENSMUST00000140727 N/A N/A N/A N/A N/A N/A N/A N/A 0.254±0.00 N/A N/A N/A N/A N/A
ENSMUST00000140979 0.775±0.38 1.250±0.10 2.360±0.00 4.548±0.86 3.174±0.70 N/A 1.893±0.31 0.336±0.13 0.108±0.04 0.778±0.11 7.305±1.17 2.980±0.99 0.720±0.39 0.188±0.06
ENSMUST00000144331 0.971±0.00 N/A 1.272±0.00 2.136±0.00 3.108±0.77 0.777±0.14 0.668±0.00 0.517±0.05 0.133±0.04 0.697±0.10 2.535±0.63 N/A 0.335±0.03 N/A
ENSMUST00000152830 0.864±0.72 2.010±0.59 1.381±0.12 2.451±0.06 2.539±1.30 0.952±0.18 0.452±0.01 0.217±0.08 0.075±0.03 0.652±0.05 2.157±0.14 3.288±0.65 0.240±0.02 0.092±0.02
ENSMUST00000169480 0.590±0.36 1.143±0.00 1.338±0.30 1.918±0.00 1.995±0.00 N/A 0.674±0.23 0.134±0.00 0.055±0.03 N/A N/A 1.249±0.29 0.075±0.00 N/A
ENSMUST00000176669 N/A N/A N/A N/A N/A N/A N/A N/A 0.170±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HQ CIL_0004HQ_0002 CGP 17:50733127-51833290
CIL_0007OK CIL_0007OK_0002 UCNEbase 17:50842411-52465650
CIL_000816 CIL_000816_0002 VISTA 17:51236358-51837318
CIL_0004HR CIL_0004HR_0002 CGP 17:51736187-52979194

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000785 IDA chromatin
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005720 IDA nuclear heterochromatin
GO:0006325 IDA chromatin organization
GO:0006338 IMP chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0008544 IMP epidermis development
GO:0016363 IDA nuclear matrix
GO:0016571 IDA histone methylation
GO:0016605 IEA PML body
GO:0042110 IMP T cell activation
GO:0043367 IMP CD4-positive, alpha-beta T cell differentiation
GO:0043374 IMP CD8-positive, alpha-beta T cell differentiation
GO:0050798 IMP activated T cell proliferation
GO:0060004 IMP reflex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062621 SATB1 SATB homeobox 1 protein_coding Danio_rerio
ENSG00000182568 SATB1 SATB homeobox 1 protein_coding Homo_sapiens

Loading