C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: special AT-rich sequence binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129667 Satb1-003 ENSMUSG00000023927 10090 - 17:51739455-51826566 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000129667
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000129667 2.156±1.09 5.366±1.28 4.312±1.42 8.315±2.44 10.851±4.78 2.186±0.46 2.583±0.20 0.726±0.25 0.338±0.19 2.369±0.34 9.866±2.57 1.375±1.05 0.417±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HQ CIL_0004HQ_0002 CGP 17:50733127-51833290
CIL_0007OK CIL_0007OK_0002 UCNEbase 17:50842411-52465650
CIL_000816 CIL_000816_0002 VISTA 17:51236358-51837318
CIL_0004HR CIL_0004HR_0002 CGP 17:51736187-52979194

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000785 IDA chromatin
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005720 IDA nuclear heterochromatin
GO:0006325 IDA chromatin organization
GO:0006338 IMP chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0008544 IMP epidermis development
GO:0016363 IDA nuclear matrix
GO:0016571 IDA histone methylation
GO:0042110 IMP T cell activation
GO:0043367 IMP CD4-positive, alpha-beta T cell differentiation
GO:0043374 IMP CD8-positive, alpha-beta T cell differentiation
GO:0050798 IMP activated T cell proliferation
GO:0060004 IMP reflex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338745 SATB1-001 protein_coding Homo_sapiens 0 3509
ENST00000414509 SATB1-011 protein_coding Homo_sapiens 0 582
ENST00000415069 SATB1-006 protein_coding Homo_sapiens 0 797
ENST00000417717 SATB1-004 protein_coding Homo_sapiens 0 2595
ENST00000440737 SATB1-008 protein_coding Homo_sapiens 0 1051
ENST00000444341 SATB1-012 protein_coding Homo_sapiens 0 394
ENST00000450898 SATB1-013 protein_coding Homo_sapiens 0.00000000000001 84
ENST00000452260 SATB1-015 protein_coding Homo_sapiens 0 815
ENST00000454909 SATB1-002 protein_coding Homo_sapiens 0 3591
ENST00000457005 SATB1-014 protein_coding Homo_sapiens 0 647
ENST00000467628 SATB1-019 retained_intron Homo_sapiens 0 497
ENST00000475083 SATB1-016 protein_coding Homo_sapiens 0 741
ENST00000482788 SATB1-018 retained_intron Homo_sapiens 0 368
ENST00000487699 SATB1-010 retained_intron Homo_sapiens 0 481
ENST00000491519 SATB1-017 protein_coding Homo_sapiens 0 628
ENST00000493952 SATB1-009 protein_coding Homo_sapiens 0 390
ENST00000606296 SATB1-003 retained_intron Homo_sapiens 0 815

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