C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SATB homeobox 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182568 SATB1 9606 - 3:18345387-18445588 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000338745 SATB1-001 18345387-18425337 protein_coding
  ENST00000414509 SATB1-011 18416942-18438692 protein_coding
  ENST00000415069 SATB1-006 18416023-18445588 protein_coding
  ENST00000417717 SATB1-004 18347940-18424573 protein_coding
  ENST00000440737 SATB1-008 18397256-18444883 protein_coding
  ENST00000444341 SATB1-012 18420756-18435253 protein_coding
  ENST00000450898 SATB1-013 18420944-18425369 protein_coding
  ENST00000452260 SATB1-015 18416004-18421388 protein_coding
  ENST00000454909 SATB1-002 18347940-18438773 protein_coding
  ENST00000457005 SATB1-014 18416901-18424740 protein_coding
  ENST00000467628 SATB1-019 18351803-18378327 retained_intron
  ENST00000475083 SATB1-016 18397214-18417510 protein_coding
  ENST00000476178 SATB1-007 18349541-18351531 retained_intron
  ENST00000482788 SATB1-018 18414949-18416126 retained_intron
  ENST00000487699 SATB1-010 18420685-18438734 retained_intron
  ENST00000491519 SATB1-017 18410798-18417393 protein_coding
  ENST00000493952 SATB1-009 18417576-18444873 protein_coding
  ENST00000606296 SATB1-003 18348885-18353084 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000338745ENST00000417717ENST00000454909
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000338745 N/A 1.723±0.00 N/A 3.738±0.50 N/A 2.726±0.00 1.485±0.30 1.590±0.00 2.032±1.58 0.997±0.00 1.275±0.20 N/A N/A
ENST00000417717 4.003±0.00 N/A 3.649±0.00 5.418±0.26 5.889±1.16 4.574±0.60 5.994±3.21 N/A 3.975±3.12 3.997±1.74 9.612±3.39 N/A 2.561±0.00
ENST00000454909 N/A 3.768±0.00 N/A 9.568±0.00 N/A 5.714±0.00 N/A 3.222±0.00 0.930±0.00 2.755±0.00 3.353±0.00 0.952±0.00 4.089±0.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HQ CIL_0004HQ_0001 CGP 3:17157162-18445588
CIL_0007OK CIL_0007OK_0001 UCNEbase 3:17286171-18992888
CIL_000816 CIL_000816_0001 VISTA 3:17827870-18428745
CIL_0004HR CIL_0004HR_0001 CGP 3:18345387-19535646

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000785 IEA chromatin
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003690 TAS double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005720 IEA nuclear heterochromatin
GO:0006325 TAS chromatin organization
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006915 TAS apoptotic process
GO:0006921 TAS cellular component disassembly involved in execution phase of apoptosis
GO:0008544 IEA epidermis development
GO:0016032 IEA viral process
GO:0016363 IEA nuclear matrix
GO:0016571 IEA histone methylation
GO:0016605 IDA PML body
GO:0042110 IEA T cell activation
GO:0043367 IEA CD4-positive, alpha-beta T cell differentiation
GO:0043374 IEA CD8-positive, alpha-beta T cell differentiation
GO:0050798 IEA activated T cell proliferation
GO:0060004 IEA reflex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000062621 SATB1 SATB homeobox 1 protein_coding Danio_rerio
ENSMUSG00000023927 Satb1 special AT-rich sequence binding protein 1 protein_coding Mus_musculus

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