C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cap methyltransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024019 Cmtr1 10090 + 17:29660595-29705979 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000024816 Cmtr1-001 29660595-29705979 protein_coding
  ENSMUST00000127695 Cmtr1-008 29681176-29685928 processed_transcript
  ENSMUST00000128410 Cmtr1-005 29678879-29690407 retained_intron
  ENSMUST00000129864 Cmtr1-006 29679261-29682165 protein_coding
  ENSMUST00000130052 Cmtr1-007 29680446-29689991 processed_transcript
  ENSMUST00000130423 Cmtr1-004 29660807-29674290 protein_coding
  ENSMUST00000138939 Cmtr1-002 29687056-29703359 retained_intron
  ENSMUST00000172516 Cmtr1-011 29682149-29690095 retained_intron
  ENSMUST00000172610 Cmtr1-010 29685795-29690077 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024816ENSMUST00000128410ENSMUST00000138939
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024816 5.495±1.12 7.056±1.82 7.980±0.85 8.851±0.29 6.160±0.80 5.786±0.66 3.705±0.44 4.303±0.93 5.462±0.91 5.501±0.84 2.990±0.87 8.665±2.20 5.544±1.56 5.019±0.74
ENSMUST00000128410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.565±0.00 N/A
ENSMUST00000138939 14.192±2.54 16.049±1.26 8.740±0.00 12.301±0.00 20.721±5.43 9.285±0.00 11.791±0.37 10.693±1.94 12.054±1.56 12.796±1.38 4.811±0.37 14.071±2.88 13.805±6.86 11.402±0.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089L CIL_00089L_0002 VISTA 17:29133661-29735358
CIL_0001Z5 CIL_0001Z5_0002 CGP 17:29614876-29705979
CIL_0001Z6 CIL_0001Z6_0002 CGP 17:29660595-29717012

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004483 ISS mRNA (nucleoside-2'-O-)-methyltransferase activity
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006370 ISS 7-methylguanosine mRNA capping
GO:0080009 ISS mRNA methylation
GO:0097309 ISS cap1 mRNA methylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000030830 cmtr1 cap methyltransferase 1 protein_coding Danio_rerio
ENSG00000137200 CMTR1 cap methyltransferase 1 protein_coding Homo_sapiens

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