C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMC hinge domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127430 Smchd1-001 ENSMUSG00000024054 10090 - 17:71344489-71475343 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000127430
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000127430 2.626±1.06 1.893±0.57 3.445±0.39 3.890±0.23 2.560±1.45 0.410±0.00 1.433±0.58 0.799±0.33 3.882±3.04 2.777±0.71 0.869±0.08 4.037±2.96 11.526±4.44 1.699±0.56

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001740 IDA Barr body
GO:0005524 IEA ATP binding
GO:0009048 IMP dosage compensation by inactivation of X chromosome
GO:0051276 IEA chromosome organization
GO:0060821 IMP inactivation of X chromosome by DNA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320876 SMCHD1-001 protein_coding Homo_sapiens 0 6427
ENST00000577300 SMCHD1-012 retained_intron Homo_sapiens 0 505
ENST00000577880 SMCHD1-006 nonsense_mediated_decay Homo_sapiens 0 4359
ENST00000581226 SMCHD1-005 retained_intron Homo_sapiens 0 457
ENST00000581631 SMCHD1-014 retained_intron Homo_sapiens 0 701
ENST00000581711 SMCHD1-013 retained_intron Homo_sapiens 0 510
ENST00000584897 SMCHD1-007 nonsense_mediated_decay Homo_sapiens 0 2793
ENST00000585229 SMCHD1-004 nonsense_mediated_decay Homo_sapiens 0 204
ENST00000609587 SMCHD1-016 processed_transcript Homo_sapiens 2e-36 156

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