C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine-rich PPR-motif containing
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024120 Lrpprc 10090 - 17:84705247-84790789 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000112308 Lrpprc-001 84705247-84790558 protein_coding
  ENSMUST00000159222 Lrpprc-004 84770437-84777543 processed_transcript
  ENSMUST00000160011 Lrpprc-006 84731180-84751262 nonsense_mediated_decay
  ENSMUST00000160414 Lrpprc-005 84748781-84751262 retained_intron
  ENSMUST00000161299 Lrpprc-003 84767589-84790562 retained_intron
  ENSMUST00000161928 Lrpprc-002 84766428-84790789 retained_intron
  ENSMUST00000162799 Lrpprc-007 84712784-84731184 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000112308ENSMUST00000161299ENSMUST00000161928
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000112308 6.449±1.17 6.961±2.29 6.463±1.08 10.654±5.39 7.100±0.83 5.963±1.67 21.494±3.13 14.602±1.66 13.785±1.74 4.641±0.93 16.529±1.48 7.076±4.22 12.165±8.75 5.795±0.93
ENSMUST00000161299 N/A 25.766±1.65 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161928 N/A 18.274±11.11 N/A N/A 3.376±0.00 1.780±0.00 N/A N/A N/A N/A N/A 4.159±0.99 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XN CIL_0001XN_0002 CGP 17:84676302-84790789
CIL_0001XM CIL_0001XM_0002 CGP 17:84705247-85023991

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000794 ISS condensed nuclear chromosome
GO:0000961 IMP negative regulation of mitochondrial RNA catabolic process
GO:0003697 IDA single-stranded DNA binding
GO:0003723 IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005856 ISS cytoskeleton
GO:0005874 IEA microtubule
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016020 IEA membrane
GO:0030529 IDA ribonucleoprotein complex
GO:0042645 IEA mitochondrial nucleoid
GO:0044822 IEA poly(A) RNA binding
GO:0048471 ISS perinuclear region of cytoplasm
GO:0048487 ISS beta-tubulin binding
GO:0051028 IEA mRNA transport
GO:0070129 IMP regulation of mitochondrial translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043970 lrpprc leucine-rich PPR-motif containing protein_coding Danio_rerio
ENSG00000138095 LRPPRC leucine-rich pentatricopeptide repeat containing protein_coding Homo_sapiens

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