C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001XM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138095-ENSG00000138032 CGP 9606 2:43886508-44244384
GeneTranscriptPositionBiotype
ENSG00000138032 (PPM1B)
protein phosphatase, Mg2+/Mn2+ dependent, 1B 		ENST00000282412 (PPM1B-001) 44168877-44231472 protein_coding
ENST00000345249 (PPM1B-003) 44168910-44231472 protein_coding
ENST00000378540 (PPM1B-007) 44168877-44244384 processed_transcript
ENST00000378551 (PPM1B-002) 44168877-44234646 protein_coding
ENST00000409432 (PPM1B-004) 44168877-44231471 protein_coding
ENST00000409473 (PPM1B-011) 44201186-44218537 protein_coding
ENST00000409486 (PPM1B-006) 44168877-44209432 retained_intron
ENST00000419807 (PPM1B-005) 44167969-44218537 protein_coding
ENST00000459690 (PPM1B-010) 44201946-44232721 processed_transcript
ENST00000487286 (PPM1B-009) 44202017-44244383 processed_transcript
ENST00000488866 (PPM1B-012) 44217822-44219203 retained_intron
ENSG00000138095 (LRPPRC)
leucine-rich pentatricopeptide repeat containing 		ENST00000260665 (LRPPRC-001) 43886508-43996005 protein_coding
ENST00000409659 (LRPPRC-005) 43963508-43995989 protein_coding
ENST00000409946 (LRPPRC-002) 43958986-43995978 protein_coding
ENST00000419884 (LRPPRC-009) 43888278-43899284 protein_coding
ENST00000447246 (LRPPRC-003) 43974150-43995976 protein_coding
ENST00000463456 (LRPPRC-006) 43888279-43903931 retained_intron
ENST00000467058 (LRPPRC-007) 43948426-43963804 retained_intron
ENST00000472420 (LRPPRC-010) 43896237-43899571 retained_intron
ENST00000483489 (LRPPRC-008) 43896444-43899648 retained_intron
ENSG00000200924 (RNU6-1048P)
RNA, U6 small nuclear 1048, pseudogene 		ENST00000364054 (RNU6-1048P-201) 43892690-43892796 snRNA
ENSG00000219391 (AC019129.1)
 ENST00000403786 (AC019129.1-001) 44065894-44066154 processed_pseudogene
ENSG00000224637 (PDSS1P2)
prenyl (decaprenyl) diphosphate synthase, subunit 1 pseudogene 2 		ENST00000449397 (PDSS1P2-001) 44166266-44166943 unprocessed_pseudogene
ENSG00000264047 (RN7SL455P)
RNA, 7SL, cytoplasmic 455, pseudogene 		ENST00000580629 (RN7SL455P-201) 43904412-43904693 misc_RNA
CIL_0001XM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024120-ENSMUSG00000061130 CGP 10090 17:84705247-85023991
GeneTranscriptPositionBiotype
ENSMUSG00000024120 (Lrpprc)
leucine-rich PPR-motif containing 		ENSMUST00000112308 (Lrpprc-001) 84705247-84790558 protein_coding
ENSMUST00000159222 (Lrpprc-004) 84770437-84777543 processed_transcript
ENSMUST00000160011 (Lrpprc-006) 84731180-84751262 nonsense_mediated_decay
ENSMUST00000160414 (Lrpprc-005) 84748781-84751262 retained_intron
ENSMUST00000161299 (Lrpprc-003) 84767589-84790562 retained_intron
ENSMUST00000161928 (Lrpprc-002) 84766428-84790789 retained_intron
ENSMUST00000162799 (Lrpprc-007) 84712784-84731184 processed_transcript
ENSMUSG00000061130 (Ppm1b)
protein phosphatase 1B, magnesium dependent, beta isoform 		ENSMUST00000080217 (Ppm1b-201) 84958001-85014776 protein_coding
ENSMUST00000112304 (Ppm1b-202) 84958001-85017128 protein_coding
ENSMUST00000112305 (Ppm1b-203) 84956741-85023991 protein_coding
ENSMUST00000112307 (Ppm1b-204) 84993673-85023991 protein_coding
ENSMUSG00000097047 (1110020A21Rik)
RIKEN cDNA 1110020A21 gene 		ENSMUST00000181147 (1110020A21Rik-201) 84954967-84957710 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001XM_0001ENSG00000138032ENST00000282412ENST00000345249ENST00000378540ENST00000378551ENST00000409432ENST00000409473ENST00000409486ENST00000419807ENST00000459690ENST00000487286ENST00000488866ENSG00000138095ENST00000260665ENST00000409659ENST00000409946ENST00000419884ENST00000447246ENST00000463456ENST00000467058ENST00000472420ENST00000483489ENSG00000200924ENST00000364054ENSG00000219391ENST00000403786ENSG00000224637ENST00000449397ENSG00000264047ENST00000580629CIL_0001XM_0002ENSMUSG00000024120ENSMUST00000112308ENSMUST00000159222ENSMUST00000160011ENSMUST00000160414ENSMUST00000161299ENSMUST00000161928ENSMUST00000162799ENSMUSG00000061130ENSMUST00000080217ENSMUST00000112304ENSMUST00000112305ENSMUST00000112307ENSMUSG00000097047ENSMUST00000181147
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001XM_0001ENSG00000138032ENST00000282412ENST00000345249ENST00000378540ENST00000378551ENST00000409432ENST00000409473ENST00000409486ENST00000419807ENSG00000138095ENST00000260665ENST00000409659ENST00000419884ENST00000483489ENSG00000200924ENST00000364054ENSG00000219391ENST00000403786ENSG00000224637ENST00000449397ENSG00000264047ENST00000580629CIL_0001XM_0002ENSMUSG00000024120ENSMUST00000112308ENSMUST00000161299ENSMUST00000161928ENSMUSG00000061130ENSMUST00000080217ENSMUST00000112304ENSMUST00000112305ENSMUST00000112307ENSMUSG00000097047ENSMUST00000181147
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138032 ENST00000282412 9.328±0.00 8.818±0.00 2.380±0.00 11.908±5.67 3.697±1.03 3.946±1.69 4.678±3.30 4.454±2.50 2.095±0.00 5.322±0.00 9.208±4.78 6.708±1.44 4.199±0.67 6.270±0.63
ENST00000345249 N/A N/A N/A N/A 6.686±0.00 N/A N/A N/A 6.148±0.00 N/A N/A 2.934±0.00 N/A 9.385±0.00
ENST00000378540 N/A N/A 1.320±0.00 N/A N/A 4.076±0.00 1.930±0.00 6.433±0.00 4.105±0.00 4.185±1.21 N/A 5.881±0.00 N/A 9.398±0.00
ENST00000378551 4.948±0.00 4.063±0.00 0.916±0.00 3.286±0.00 5.733±1.99 4.293±1.29 1.243±0.48 6.359±2.57 4.430±2.17 1.949±0.09 4.036±2.58 4.395±1.56 2.377±0.20 4.101±1.77
ENST00000409432 N/A N/A N/A N/A N/A 1.207±0.00 N/A N/A 1.508±0.00 1.710±0.00 N/A N/A N/A N/A
ENST00000409473 N/A N/A N/A 21.516±0.00 N/A N/A 8.883±0.00 N/A N/A N/A 13.479±0.00 N/A N/A N/A
ENST00000409486 N/A N/A 2.834±0.00 5.322±0.00 6.682±0.00 2.273±0.00 1.798±0.00 N/A 4.704±0.00 6.498±0.00 9.590±0.00 7.576±0.00 N/A N/A
ENST00000419807 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.822±0.00
ENST00000459690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138095 ENST00000260665 9.449±0.00 7.439±0.00 10.172±0.00 15.792±0.59 6.617±3.82 11.171±0.33 13.740±7.75 12.456±1.01 4.856±0.69 4.835±0.38 20.865±0.00 14.022±5.27 6.387±1.37 12.579±3.65
ENST00000409659 N/A N/A 8.191±0.00 N/A N/A 13.959±0.00 10.837±0.00 N/A 12.948±0.00 8.145±0.00 16.109±0.00 N/A N/A N/A
ENST00000409946 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419884 N/A 10.887±0.00 N/A N/A 13.309±0.00 10.501±0.00 N/A N/A 9.362±0.00 N/A N/A N/A N/A 16.591±0.00
ENST00000447246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 67.784±0.00 25.950±0.00 35.688±0.00
ENSG00000200924 ENST00000364054 N/A N/A N/A N/A N/A 0.891±0.00 N/A N/A N/A N/A N/A N/A N/A 0.384±0.00
ENSG00000219391 ENST00000403786 0.061±0.00 0.247±0.00 N/A N/A 0.061±0.00 N/A N/A 0.184±0.00 N/A N/A 0.104±0.00 1.191±0.00 N/A 0.056±0.00
ENSG00000224637 ENST00000449397 N/A 0.114±0.00 N/A N/A 0.067±0.00 N/A N/A N/A N/A N/A N/A 0.055±0.00 0.070±0.00 2.236±0.19
ENSG00000264047 ENST00000580629 0.824±0.00 1.635±0.00 N/A 0.523±0.00 0.844±0.00 0.085±0.00 0.260±0.00 0.189±0.00 0.323±0.00 0.089±0.00 0.317±0.00 1.023±0.21 0.622±0.00 0.397±0.23
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024120 ENSMUST00000112308 6.449±1.17 6.961±2.29 6.463±1.08 10.654±5.39 7.100±0.83 5.963±1.67 21.494±3.13 14.602±1.66 13.785±1.74 4.641±0.93 16.529±1.48 7.076±4.22 12.165±8.75 5.795±0.93
ENSMUST00000159222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160414 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161299 N/A 25.766±1.65 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161928 N/A 18.274±11.11 N/A N/A 3.376±0.00 1.780±0.00 N/A N/A N/A N/A N/A 4.159±0.99 N/A N/A
ENSMUST00000162799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000061130 ENSMUST00000080217 4.174±0.52 4.711±0.00 8.860±0.82 13.867±6.03 2.607±0.49 3.464±0.84 7.339±1.15 3.416±0.69 9.295±3.73 5.023±1.67 16.819±1.40 5.805±1.95 6.892±2.20 N/A
ENSMUST00000112304 6.654±0.47 6.195±1.43 15.751±0.46 11.194±0.94 5.739±1.42 5.356±1.65 10.299±1.03 11.179±1.79 14.937±1.90 9.131±2.23 29.707±1.96 4.838±4.07 7.962±3.44 N/A
ENSMUST00000112305 N/A N/A N/A N/A 6.290±0.00 N/A N/A N/A N/A N/A N/A N/A 5.481±0.82 25.231±0.00
ENSMUST00000112307 N/A N/A N/A 15.512±0.00 8.228±0.00 N/A N/A N/A N/A N/A N/A 17.899±0.00 14.957±0.00 54.956±51.33
ENSMUSG00000097047 ENSMUST00000181147 0.513±0.28 0.289±0.20 0.779±0.17 0.585±0.20 0.629±0.23 0.399±0.20 0.601±0.08 0.854±0.22 1.225±0.40 0.485±0.11 2.431±0.33 0.434±0.22 0.506±0.29 38.523±0.00

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