Institute of Cardiovascular Regeneration Webtool Repository

Warning (512): _cake_core_ cache was unable to write 'cake_dev_eng' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'cake_dev_eng'
$value = array(
	'LC_MESSAGES' => array()
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
I18n::translate() - CORE/Cake/I18n/I18n.php, line 237
__d - CORE/Cake/basics.php, line 617
Cache::write() - CORE/Cake/Cache/Cache.php, line 321
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = null
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 219
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (512): _cake_model_ cache was unable to write 'default_citloci_list' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'default_citloci_list'
$value = array(
	(int) 0 => 'conserved_region_elements',
	(int) 1 => 'conserved_regions',
	(int) 2 => 'diffexp',
	(int) 3 => 'experiment',
	(int) 4 => 'expressed_transcripts',
	(int) 5 => 'external_accessions',
	(int) 6 => 'genes',
	(int) 7 => 'go_annotations',
	(int) 8 => 'homologues',
	(int) 9 => 'maptranscripttoregion',
	(int) 10 => 'organism',
	(int) 11 => 'sample',
	(int) 12 => 'study',
	(int) 13 => 'synonyms',
	(int) 14 => 'transcripts'
)
$config = '_cake_model_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/models/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DataSource::listSources() - CORE/Cake/Model/Datasource/DataSource.php, line 110
Mysql::listSources() - CORE/Cake/Model/Datasource/Database/Mysql.php, line 236
Model::setSource() - CORE/Cake/Model/Model.php, line 1142
Model::getDataSource() - CORE/Cake/Model/Model.php, line 3551
Model::query() - CORE/Cake/Model/Model.php, line 3353
RegionController::show() - APP/Controller/RegionController.php, line 338
ReflectionMethod::invokeArgs() - [internal], line ??
Controller::invokeAction() - CORE/Cake/Controller/Controller.php, line 490
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 191
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Region Summary

CIL_0001XM_0001 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSG00000138095-ENSG00000138032	CGP	9606	2:43886508-44244384
Gene	Transcript	Position	Biotype
ENSG00000138032 (PPM1B) protein phosphatase, Mg2+/Mn2+ dependent, 1B	ENST00000282412 (PPM1B-001)	44168877-44231472	protein_coding
	ENST00000345249 (PPM1B-003)	44168910-44231472	protein_coding
	ENST00000378540 (PPM1B-007)	44168877-44244384	processed_transcript
	ENST00000378551 (PPM1B-002)	44168877-44234646	protein_coding
	ENST00000409432 (PPM1B-004)	44168877-44231471	protein_coding
	ENST00000409473 (PPM1B-011)	44201186-44218537	protein_coding
	ENST00000409486 (PPM1B-006)	44168877-44209432	retained_intron
	ENST00000419807 (PPM1B-005)	44167969-44218537	protein_coding
	ENST00000459690 (PPM1B-010)	44201946-44232721	processed_transcript
	ENST00000487286 (PPM1B-009)	44202017-44244383	processed_transcript
	ENST00000488866 (PPM1B-012)	44217822-44219203	retained_intron
ENSG00000138095 (LRPPRC) leucine-rich pentatricopeptide repeat containing	ENST00000260665 (LRPPRC-001)	43886508-43996005	protein_coding
	ENST00000409659 (LRPPRC-005)	43963508-43995989	protein_coding
	ENST00000409946 (LRPPRC-002)	43958986-43995978	protein_coding
	ENST00000419884 (LRPPRC-009)	43888278-43899284	protein_coding
	ENST00000447246 (LRPPRC-003)	43974150-43995976	protein_coding
	ENST00000463456 (LRPPRC-006)	43888279-43903931	retained_intron
	ENST00000467058 (LRPPRC-007)	43948426-43963804	retained_intron
	ENST00000472420 (LRPPRC-010)	43896237-43899571	retained_intron
	ENST00000483489 (LRPPRC-008)	43896444-43899648	retained_intron
ENSG00000200924 (RNU6-1048P) RNA, U6 small nuclear 1048, pseudogene	ENST00000364054 (RNU6-1048P-201)	43892690-43892796	snRNA
ENSG00000219391 (AC019129.1)	ENST00000403786 (AC019129.1-001)	44065894-44066154	processed_pseudogene
ENSG00000224637 (PDSS1P2) prenyl (decaprenyl) diphosphate synthase, subunit 1 pseudogene 2	ENST00000449397 (PDSS1P2-001)	44166266-44166943	unprocessed_pseudogene
ENSG00000264047 (RN7SL455P) RNA, 7SL, cytoplasmic 455, pseudogene	ENST00000580629 (RN7SL455P-201)	43904412-43904693	misc_RNA

CIL_0001XM_0002 (Click to Hide/Show)

Source ID	Type	Tax ID	Position
ENSMUSG00000024120-ENSMUSG00000061130	CGP	10090	17:84705247-85023991
Gene	Transcript	Position	Biotype
ENSMUSG00000024120 (Lrpprc) leucine-rich PPR-motif containing	ENSMUST00000112308 (Lrpprc-001)	84705247-84790558	protein_coding
	ENSMUST00000159222 (Lrpprc-004)	84770437-84777543	processed_transcript
	ENSMUST00000160011 (Lrpprc-006)	84731180-84751262	nonsense_mediated_decay
	ENSMUST00000160414 (Lrpprc-005)	84748781-84751262	retained_intron
	ENSMUST00000161299 (Lrpprc-003)	84767589-84790562	retained_intron
	ENSMUST00000161928 (Lrpprc-002)	84766428-84790789	retained_intron
	ENSMUST00000162799 (Lrpprc-007)	84712784-84731184	processed_transcript
ENSMUSG00000061130 (Ppm1b) protein phosphatase 1B, magnesium dependent, beta isoform	ENSMUST00000080217 (Ppm1b-201)	84958001-85014776	protein_coding
	ENSMUST00000112304 (Ppm1b-202)	84958001-85017128	protein_coding
	ENSMUST00000112305 (Ppm1b-203)	84956741-85023991	protein_coding
	ENSMUST00000112307 (Ppm1b-204)	84993673-85023991	protein_coding
ENSMUSG00000097047 (1110020A21Rik) RIKEN cDNA 1110020A21 gene	ENSMUST00000181147 (1110020A21Rik-201)	84954967-84957710	lincRNA

Expression Patterns

Heat Map

Heat Map (Expressed Only)

Numeric Values

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSG00000138032

ENST00000282412

9.328±0.00

8.818±0.00

2.380±0.00

11.908±5.67

3.697±1.03

3.946±1.69

4.678±3.30

4.454±2.50

2.095±0.00

5.322±0.00

9.208±4.78

6.708±1.44

4.199±0.67

6.270±0.63

ENST00000345249

N/A

6.686±0.00

N/A

6.148±0.00

N/A

2.934±0.00

N/A

9.385±0.00

ENST00000378540

N/A

1.320±0.00

N/A

4.076±0.00

1.930±0.00

6.433±0.00

4.105±0.00

4.185±1.21

N/A

5.881±0.00

N/A

9.398±0.00

ENST00000378551

4.948±0.00

4.063±0.00

0.916±0.00

3.286±0.00

5.733±1.99

4.293±1.29

1.243±0.48

6.359±2.57

4.430±2.17

1.949±0.09

4.036±2.58

4.395±1.56

2.377±0.20

4.101±1.77

ENST00000409432

N/A

1.207±0.00

N/A

1.508±0.00

1.710±0.00

N/A

ENST00000409473

N/A

21.516±0.00

N/A

8.883±0.00

N/A

13.479±0.00

N/A

ENST00000409486

N/A

2.834±0.00

5.322±0.00

6.682±0.00

2.273±0.00

1.798±0.00

N/A

4.704±0.00

6.498±0.00

9.590±0.00

7.576±0.00

N/A

ENST00000419807

N/A

4.822±0.00

ENST00000459690

N/A

ENST00000487286

N/A

ENST00000488866

N/A

ENSG00000138095

ENST00000260665

9.449±0.00

7.439±0.00

10.172±0.00

15.792±0.59

6.617±3.82

11.171±0.33

13.740±7.75

12.456±1.01

4.856±0.69

4.835±0.38

20.865±0.00

14.022±5.27

6.387±1.37

12.579±3.65

ENST00000409659

N/A

8.191±0.00

N/A

13.959±0.00

10.837±0.00

N/A

12.948±0.00

8.145±0.00

16.109±0.00

N/A

ENST00000409946

N/A

ENST00000419884

N/A

10.887±0.00

N/A

13.309±0.00

10.501±0.00

N/A

9.362±0.00

N/A

16.591±0.00

N/A

N/A

N/A

N/A

N/A

67.784±0.00

25.950±0.00

35.688±0.00

ENSG00000200924

ENST00000364054

N/A

0.891±0.00

N/A

0.384±0.00

ENSG00000219391

ENST00000403786

0.061±0.00

0.247±0.00

N/A

0.061±0.00

N/A

0.184±0.00

N/A

0.104±0.00

1.191±0.00

N/A

0.056±0.00

ENSG00000224637

ENST00000449397

N/A

0.114±0.00

N/A

0.067±0.00

N/A

0.055±0.00

0.070±0.00

2.236±0.19

ENSG00000264047

ENST00000580629

0.824±0.00

1.635±0.00

N/A

0.523±0.00

0.844±0.00

0.085±0.00

0.260±0.00

0.189±0.00

0.323±0.00

0.089±0.00

0.317±0.00

1.023±0.21

0.622±0.00

0.397±0.23

Gene

Transcript

Adipose

Adrenal

Bladder

Brain

Breast

Colon

Heart

Kidney

Liver

Lung

Muscle

Ovary

Placenta

Testis

ENSMUSG00000024120

ENSMUST00000112308

6.449±1.17

6.961±2.29

6.463±1.08

10.654±5.39

7.100±0.83

5.963±1.67

21.494±3.13

14.602±1.66

13.785±1.74

4.641±0.93

16.529±1.48

7.076±4.22

12.165±8.75

5.795±0.93

N/A

N/A

N/A

N/A

25.766±1.65

N/A

ENSMUST00000161928

N/A

18.274±11.11

N/A

3.376±0.00

1.780±0.00

N/A

4.159±0.99

N/A

ENSMUST00000162799

N/A

ENSMUSG00000061130

ENSMUST00000080217

4.174±0.52

4.711±0.00

8.860±0.82

13.867±6.03

2.607±0.49

3.464±0.84

7.339±1.15

3.416±0.69

9.295±3.73

5.023±1.67

16.819±1.40

5.805±1.95

6.892±2.20

N/A

ENSMUST00000112304

6.654±0.47

6.195±1.43

15.751±0.46

11.194±0.94

5.739±1.42

5.356±1.65

10.299±1.03

11.179±1.79

14.937±1.90

9.131±2.23

29.707±1.96

4.838±4.07

7.962±3.44

N/A

ENSMUST00000112305

N/A

6.290±0.00

N/A

5.481±0.82

25.231±0.00

ENSMUST00000112307

N/A

15.512±0.00

8.228±0.00

N/A

17.899±0.00

14.957±0.00

54.956±51.33

ENSMUSG00000097047

ENSMUST00000181147

0.513±0.28

0.289±0.20

0.779±0.17

0.585±0.20

0.629±0.23

0.399±0.20

0.601±0.08

0.854±0.22

1.225±0.40

0.485±0.11

2.431±0.33

0.434±0.22

0.506±0.29

38.523±0.00

Warning (512): _cake_core_ cache was unable to write 'file_map' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'file_map'
$value = array(
	'Configure' => '/var/www/c-it-loci/lib/Cake/Core/Configure.php',
	'Hash' => '/var/www/c-it-loci/lib/Cake/Utility/Hash.php',
	'Cache' => '/var/www/c-it-loci/lib/Cake/Cache/Cache.php',
	'FileEngine' => '/var/www/c-it-loci/lib/Cake/Cache/Engine/FileEngine.php',
	'CacheEngine' => '/var/www/c-it-loci/lib/Cake/Cache/CacheEngine.php',
	'Inflector' => '/var/www/c-it-loci/lib/Cake/Utility/Inflector.php',
	'ErrorHandler' => '/var/www/c-it-loci/lib/Cake/Error/ErrorHandler.php',
	'CakePlugin' => '/var/www/c-it-loci/lib/Cake/Core/CakePlugin.php',
	'CakeLog' => '/var/www/c-it-loci/lib/Cake/Log/CakeLog.php',
	'LogEngineCollection' => '/var/www/c-it-loci/lib/Cake/Log/LogEngineCollection.php',
	'ObjectCollection' => '/var/www/c-it-loci/lib/Cake/Utility/ObjectCollection.php',
	'FileLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/FileLog.php',
	'BaseLog' => '/var/www/c-it-loci/lib/Cake/Log/Engine/BaseLog.php',
	'CakeLogInterface' => '/var/www/c-it-loci/lib/Cake/Log/CakeLogInterface.php',
	'Debugger' => '/var/www/c-it-loci/lib/Cake/Utility/Debugger.php',
	'String' => '/var/www/c-it-loci/lib/Cake/Utility/String.php',
	'Dispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Dispatcher.php',
	'CakeEventListener' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventListener.php',
	'CakeRequest' => '/var/www/c-it-loci/lib/Cake/Network/CakeRequest.php',
	'CakeResponse' => '/var/www/c-it-loci/lib/Cake/Network/CakeResponse.php',
	'CakeEvent' => '/var/www/c-it-loci/lib/Cake/Event/CakeEvent.php',
	'CakeEventManager' => '/var/www/c-it-loci/lib/Cake/Event/CakeEventManager.php',
	'AssetDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/AssetDispatcher.php',
	'DispatcherFilter' => '/var/www/c-it-loci/lib/Cake/Routing/DispatcherFilter.php',
	'CacheDispatcher' => '/var/www/c-it-loci/lib/Cake/Routing/Filter/CacheDispatcher.php',
	'Router' => '/var/www/c-it-loci/lib/Cake/Routing/Router.php',
	'CakeRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/CakeRoute.php',
	'PluginShortRoute' => '/var/www/c-it-loci/lib/Cake/Routing/Route/PluginShortRoute.php',
	'RegionController' => '/var/www/c-it-loci/app/Controller/RegionController.php',
	'AppController' => '/var/www/c-it-loci/app/Controller/AppController.php',
	'Controller' => '/var/www/c-it-loci/lib/Cake/Controller/Controller.php',
	'Object' => '/var/www/c-it-loci/lib/Cake/Core/Object.php',
	'ComponentCollection' => '/var/www/c-it-loci/lib/Cake/Controller/ComponentCollection.php',
	'SessionComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/SessionComponent.php',
	'Component' => '/var/www/c-it-loci/lib/Cake/Controller/Component.php',
	'RequestHandlerComponent' => '/var/www/c-it-loci/lib/Cake/Controller/Component/RequestHandlerComponent.php',
	'ClassRegistry' => '/var/www/c-it-loci/lib/Cake/Utility/ClassRegistry.php',
	'Region' => '/var/www/c-it-loci/app/Model/Region.php',
	'AppModel' => '/var/www/c-it-loci/app/Model/AppModel.php',
	'Model' => '/var/www/c-it-loci/lib/Cake/Model/Model.php',
	'BehaviorCollection' => '/var/www/c-it-loci/lib/Cake/Model/BehaviorCollection.php',
	'ConnectionManager' => '/var/www/c-it-loci/lib/Cake/Model/ConnectionManager.php',
	'Mysql' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/Database/Mysql.php',
	'DboSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DboSource.php',
	'DataSource' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/DataSource.php',
	'I18n' => '/var/www/c-it-loci/lib/Cake/I18n/I18n.php',
	'L10n' => '/var/www/c-it-loci/lib/Cake/I18n/L10n.php',
	'CakeSession' => '/var/www/c-it-loci/lib/Cake/Model/Datasource/CakeSession.php',
	'View' => '/var/www/c-it-loci/lib/Cake/View/View.php',
	'HelperCollection' => '/var/www/c-it-loci/lib/Cake/View/HelperCollection.php',
	'ViewBlock' => '/var/www/c-it-loci/lib/Cake/View/ViewBlock.php',
	'HtmlHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/HtmlHelper.php',
	'AppHelper' => '/var/www/c-it-loci/app/View/Helper/AppHelper.php',
	'Helper' => '/var/www/c-it-loci/lib/Cake/View/Helper.php',
	'FormHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/FormHelper.php',
	'SessionHelper' => '/var/www/c-it-loci/lib/Cake/View/Helper/SessionHelper.php'
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
App::shutdown() - CORE/Cake/Core/App.php, line 899
[main] - [internal], line ??

Warning (512): _cake_core_ cache was unable to write 'method_cache' to File cache [CORE/Cake/Cache/Cache.php, line 323]

Code Context

                ),
                E_USER_WARNING
            );

$key = 'method_cache'
$value = array(
	(int) 0 => false,
	'name' => array(
		'45b989c52610ac6d773f6b83d6108190' => '`citloci`'
	)
)
$config = '_cake_core_'
$settings = array(
	'prefix' => '*****',
	'engine' => 'File',
	'path' => '/var/www/c-it-loci/app/tmp/cache/persistent/',
	'serialize' => true,
	'duration' => (int) 10,
	'lock' => true,
	'isWindows' => false,
	'mask' => (int) 436,
	'probability' => (int) 100,
	'groups' => array()
)
$success = false

Cache::write() - CORE/Cake/Cache/Cache.php, line 323
DboSource::__destruct() - CORE/Cake/Model/Datasource/DboSource.php, line 3539
[main] - [internal], line ??

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

Expression Patterns

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