C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine-rich pentatricopeptide repeat containing
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138095 LRPPRC 9606 - 2:43886508-43996005 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000260665 LRPPRC-001 43886508-43996005 protein_coding
  ENST00000409659 LRPPRC-005 43963508-43995989 protein_coding
  ENST00000409946 LRPPRC-002 43958986-43995978 protein_coding
  ENST00000419884 LRPPRC-009 43888278-43899284 protein_coding
  ENST00000447246 LRPPRC-003 43974150-43995976 protein_coding
  ENST00000463456 LRPPRC-006 43888279-43903931 retained_intron
  ENST00000467058 LRPPRC-007 43948426-43963804 retained_intron
  ENST00000472420 LRPPRC-010 43896237-43899571 retained_intron
  ENST00000483489 LRPPRC-008 43896444-43899648 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260665ENST00000409659ENST00000419884ENST00000483489
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260665 9.449±0.00 7.439±0.00 10.172±0.00 15.792±0.59 6.617±3.82 11.171±0.33 13.740±7.75 12.456±1.01 4.856±0.69 4.835±0.38 20.865±0.00 14.022±5.27 6.387±1.37 12.579±3.65
ENST00000409659 N/A N/A 8.191±0.00 N/A N/A 13.959±0.00 10.837±0.00 N/A 12.948±0.00 8.145±0.00 16.109±0.00 N/A N/A N/A
ENST00000419884 N/A 10.887±0.00 N/A N/A 13.309±0.00 10.501±0.00 N/A N/A 9.362±0.00 N/A N/A N/A N/A 16.591±0.00
ENST00000483489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 67.784±0.00 25.950±0.00 35.688±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XN CIL_0001XN_0001 CGP 2:43838964-43996005
CIL_0001XM CIL_0001XM_0001 CGP 2:43886508-44244384

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000794 IDA condensed nuclear chromosome
GO:0000961 IEA negative regulation of mitochondrial RNA catabolic process
GO:0003697 IEA single-stranded DNA binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005856 IDA cytoskeleton
GO:0005874 IDA microtubule
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008017 TAS microtubule binding
GO:0016020 IDA membrane
GO:0030529 IEA ribonucleoprotein complex
GO:0042645 IDA mitochondrial nucleoid
GO:0044822 IDA poly(A) RNA binding
GO:0047497 TAS mitochondrion transport along microtubule
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048487 IDA beta-tubulin binding
GO:0051028 IEA mRNA transport
GO:0070129 IEA regulation of mitochondrial translation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043970 lrpprc leucine-rich PPR-motif containing protein_coding Danio_rerio
ENSMUSG00000024120 Lrpprc leucine-rich PPR-motif containing protein_coding Mus_musculus

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