C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001XN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000143921-ENSG00000138095 CGP 9606 2:43838964-43996005
GeneTranscriptPositionBiotype
ENSG00000138095 (LRPPRC)
leucine-rich pentatricopeptide repeat containing 		ENST00000260665 (LRPPRC-001) 43886508-43996005 protein_coding
ENST00000409659 (LRPPRC-005) 43963508-43995989 protein_coding
ENST00000409946 (LRPPRC-002) 43958986-43995978 protein_coding
ENST00000419884 (LRPPRC-009) 43888278-43899284 protein_coding
ENST00000447246 (LRPPRC-003) 43974150-43995976 protein_coding
ENST00000463456 (LRPPRC-006) 43888279-43903931 retained_intron
ENST00000467058 (LRPPRC-007) 43948426-43963804 retained_intron
ENST00000472420 (LRPPRC-010) 43896237-43899571 retained_intron
ENST00000483489 (LRPPRC-008) 43896444-43899648 retained_intron
ENSG00000143921 (ABCG8)
ATP-binding cassette, sub-family G (WHITE), member 8 		ENST00000272286 (ABCG8-001) 43838964-43878466 protein_coding
ENSG00000200924 (RNU6-1048P)
RNA, U6 small nuclear 1048, pseudogene 		ENST00000364054 (RNU6-1048P-201) 43892690-43892796 snRNA
ENSG00000264047 (RN7SL455P)
RNA, 7SL, cytoplasmic 455, pseudogene 		ENST00000580629 (RN7SL455P-201) 43904412-43904693 misc_RNA
CIL_0001XN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024254-ENSMUSG00000024120 CGP 10090 17:84676302-84790789
GeneTranscriptPositionBiotype
ENSMUSG00000024120 (Lrpprc)
leucine-rich PPR-motif containing 		ENSMUST00000112308 (Lrpprc-001) 84705247-84790558 protein_coding
ENSMUST00000159222 (Lrpprc-004) 84770437-84777543 processed_transcript
ENSMUST00000160011 (Lrpprc-006) 84731180-84751262 nonsense_mediated_decay
ENSMUST00000160414 (Lrpprc-005) 84748781-84751262 retained_intron
ENSMUST00000161299 (Lrpprc-003) 84767589-84790562 retained_intron
ENSMUST00000161928 (Lrpprc-002) 84766428-84790789 retained_intron
ENSMUST00000162799 (Lrpprc-007) 84712784-84731184 processed_transcript
ENSMUSG00000024254 (Abcg8)
ATP-binding cassette, sub-family G (WHITE), member 8 		ENSMUST00000045714 (Abcg8-001) 84683121-84700333 protein_coding
ENSMUST00000170725 (Abcg8-002) 84676302-84699333 protein_coding
ENSMUST00000171915 (Abcg8-003) 84683131-84698963 protein_coding
ENSMUSG00000040505 (Abcg5)
ATP-binding cassette, sub-family G (WHITE), member 5 		ENSMUST00000066175 (Abcg5-001) 84658234-84683011 protein_coding
ENSMUST00000163375 (Abcg5-002) 84658488-84682202 protein_coding
ENSMUST00000171544 (Abcg5-003) 84669917-84674370 processed_transcript
ENSMUST00000172439 (Abcg5-004) 84670395-84676426 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001XN_0001ENSG00000138095ENST00000260665ENST00000409659ENST00000409946ENST00000419884ENST00000447246ENST00000463456ENST00000467058ENST00000472420ENST00000483489ENSG00000143921ENST00000272286ENSG00000200924ENST00000364054ENSG00000264047ENST00000580629CIL_0001XN_0002ENSMUSG00000024120ENSMUST00000112308ENSMUST00000159222ENSMUST00000160011ENSMUST00000160414ENSMUST00000161299ENSMUST00000161928ENSMUST00000162799ENSMUSG00000024254ENSMUST00000045714ENSMUST00000170725ENSMUST00000171915ENSMUSG00000040505ENSMUST00000066175ENSMUST00000163375ENSMUST00000171544ENSMUST00000172439
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001XN_0001ENSG00000138095ENST00000260665ENST00000409659ENST00000419884ENST00000483489ENSG00000143921ENST00000272286ENSG00000200924ENST00000364054ENSG00000264047ENST00000580629CIL_0001XN_0002ENSMUSG00000024120ENSMUST00000112308ENSMUST00000161299ENSMUST00000161928ENSMUSG00000024254ENSMUST00000045714ENSMUST00000170725ENSMUST00000171915ENSMUSG00000040505ENSMUST00000066175ENSMUST00000163375ENSMUST00000171544ENSMUST00000172439
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138095 ENST00000260665 9.449±0.00 7.439±0.00 10.172±0.00 15.792±0.59 6.617±3.82 11.171±0.33 13.740±7.75 12.456±1.01 4.856±0.69 4.835±0.38 20.865±0.00 14.022±5.27 6.387±1.37 12.579±3.65
ENST00000409659 N/A N/A 8.191±0.00 N/A N/A 13.959±0.00 10.837±0.00 N/A 12.948±0.00 8.145±0.00 16.109±0.00 N/A N/A N/A
ENST00000409946 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419884 N/A 10.887±0.00 N/A N/A 13.309±0.00 10.501±0.00 N/A N/A 9.362±0.00 N/A N/A N/A N/A 16.591±0.00
ENST00000447246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000463456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467058 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 67.784±0.00 25.950±0.00 35.688±0.00
ENSG00000143921 ENST00000272286 N/A 0.008±0.00 0.222±0.00 0.139±0.03 0.008±0.00 0.117±0.00 N/A 6.086±0.00 10.892±0.00 N/A N/A 0.018±0.00 N/A 0.086±0.01
ENSG00000200924 ENST00000364054 N/A N/A N/A N/A N/A 0.891±0.00 N/A N/A N/A N/A N/A N/A N/A 0.384±0.00
ENSG00000264047 ENST00000580629 0.824±0.00 1.635±0.00 N/A 0.523±0.00 0.844±0.00 0.085±0.00 0.260±0.00 0.189±0.00 0.323±0.00 0.089±0.00 0.317±0.00 1.023±0.21 0.622±0.00 0.397±0.23
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024120 ENSMUST00000112308 6.449±1.17 6.961±2.29 6.463±1.08 10.654±5.39 7.100±0.83 5.963±1.67 21.494±3.13 14.602±1.66 13.785±1.74 4.641±0.93 16.529±1.48 7.076±4.22 12.165±8.75 5.795±0.93
ENSMUST00000159222 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160414 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161299 N/A 25.766±1.65 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161928 N/A 18.274±11.11 N/A N/A 3.376±0.00 1.780±0.00 N/A N/A N/A N/A N/A 4.159±0.99 N/A N/A
ENSMUST00000162799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000024254 ENSMUST00000045714 0.027±0.00 0.084±0.00 N/A 0.168±0.00 0.079±0.02 0.721±0.02 0.018±0.00 0.060±0.01 12.430±6.84 0.028±0.01 0.008±0.00 0.056±0.03 0.012±0.00 N/A
ENSMUST00000170725 0.052±0.03 0.066±0.03 N/A 0.013±0.00 0.104±0.04 1.183±0.48 N/A 0.095±0.04 0.202±0.01 N/A N/A N/A 0.227±0.00 1.082±0.68
ENSMUST00000171915 0.010±0.00 N/A 0.052±0.00 N/A 0.051±0.03 1.773±0.72 N/A 0.213±0.00 25.288±14.34 0.080±0.00 N/A 0.096±0.07 0.095±0.10 1.249±0.31
ENSMUSG00000040505 ENSMUST00000066175 N/A 0.096±0.00 0.113±0.00 0.402±0.00 0.265±0.05 2.895±1.04 0.041±0.00 0.164±0.06 32.947±29.55 N/A N/A 0.264±0.15 0.661±0.00 N/A
ENSMUST00000163375 0.128±0.06 0.096±0.05 N/A N/A 0.187±0.11 2.653±1.40 0.021±0.00 N/A N/A 0.129±0.06 0.029±0.00 0.301±0.12 0.074±0.03 N/A
ENSMUST00000171544 0.167±0.03 N/A N/A 0.030±0.00 0.042±0.00 N/A N/A N/A N/A N/A N/A 0.292±0.00 N/A N/A
ENSMUST00000172439 N/A N/A N/A 0.681±0.00 0.107±0.00 1.736±0.00 N/A 0.140±0.00 N/A 0.146±0.02 N/A 0.120±0.01 0.079±0.00 N/A

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