C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024218 Taf11 10090 - 17:27901122-27909242 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000025057 Taf11-201 27901128-27907724 protein_coding
  ENSMUST00000114848 Taf11-001 27901122-27909242 protein_coding
  ENSMUST00000155667 Taf11-002 27901662-27903271 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025057ENSMUST00000114848
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025057 5.799±0.18 N/A 15.887±2.99 8.294±1.38 2.538±0.60 2.747±0.36 4.512±1.09 4.951±1.31 8.477±6.03 4.348±1.10 10.327±0.98 11.380±4.68 13.833±2.76 7.862±0.00
ENSMUST00000114848 2.383±0.19 6.943±0.10 2.224±0.00 5.662±0.76 2.130±1.39 2.432±0.32 1.084±0.16 2.444±0.66 1.340±0.41 3.055±0.05 0.951±0.20 3.244±1.18 1.952±0.48 8.711±6.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EW CIL_0002EW_0002 CGP 17:27856490-27909242
CIL_0002EV CIL_0002EV_0002 CGP 17:27901122-28062600

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0003713 IEA transcription coactivator activity
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005669 ISO transcription factor TFIID complex
GO:0005794 IEA Golgi apparatus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006367 IEA transcription initiation from RNA polymerase II promoter
GO:0042809 IEA vitamin D receptor binding
GO:0043923 IEA positive regulation by host of viral transcription
GO:0046966 IEA thyroid hormone receptor binding
GO:0046982 IEA protein heterodimerization activity
GO:0047485 IEA protein N-terminus binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037855 taf11 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Danio_rerio
ENSG00000064995 TAF11 TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa protein_coding Homo_sapiens

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