C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XI, alpha 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024330 Col11a2 10090 + 17:34039437-34066685 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087497 Col11a2-001 34039437-34066685 protein_coding
  ENSMUST00000114252 Col11a2-201 34039437-34066242 protein_coding
  ENSMUST00000114255 Col11a2-202 34039437-34066242 protein_coding
  ENSMUST00000131134 Col11a2-002 34039437-34052517 protein_coding
  ENSMUST00000137374 Col11a2-005 34055081-34056444 retained_intron
  ENSMUST00000143354 Col11a2-003 34048280-34059952 protein_coding
  ENSMUST00000144927 Col11a2-006 34062421-34064793 retained_intron
  ENSMUST00000173749 Col11a2-007 34052307-34054329 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087497ENSMUST00000114252ENSMUST00000114255ENSMUST00000131134ENSMUST00000143354ENSMUST00000144927
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087497 N/A 0.095±0.00 N/A 3.214±0.24 0.818±0.27 N/A 0.092±0.00 0.072±0.02 0.091±0.08 0.133±0.00 N/A 0.170±0.10 0.694±0.72 0.277±0.07
ENSMUST00000114252 0.072±0.00 0.034±0.00 0.146±0.09 3.217±2.60 0.373±0.00 0.160±0.00 N/A 0.173±0.00 0.058±0.03 N/A 0.684±0.25 0.397±0.25 0.386±0.04 0.294±0.05
ENSMUST00000114255 0.046±0.00 0.098±0.03 N/A N/A 0.258±0.00 0.135±0.03 0.169±0.00 N/A 0.070±0.02 N/A 0.302±0.00 0.243±0.00 0.398±0.04 N/A
ENSMUST00000131134 0.142±0.07 0.146±0.04 N/A 3.541±0.00 0.596±0.22 0.315±0.05 0.322±0.16 0.089±0.00 N/A 0.283±0.10 N/A 0.389±0.09 0.682±0.00 N/A
ENSMUST00000143354 N/A N/A N/A N/A N/A 0.232±0.00 N/A 0.070±0.00 0.051±0.00 N/A N/A 1.380±0.00 0.743±0.11 0.554±0.00
ENSMUST00000144927 N/A 0.351±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001503 IEA ossification
GO:0001894 IMP tissue homeostasis
GO:0002062 IMP chondrocyte differentiation
GO:0005201 IC extracellular matrix structural constituent
GO:0005581 IDA collagen trimer
GO:0005592 IEA collagen type XI trimer
GO:0007605 IMP sensory perception of sound
GO:0030199 IMP collagen fibril organization
GO:0046872 IEA metal ion binding
GO:0048705 IMP skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012422 col11a2 collagen type XI alpha-2 protein_coding Danio_rerio
ENSG00000204248 COL11A2 collagen, type XI, alpha 2 protein_coding Homo_sapiens

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