C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XI, alpha 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000204248 COL11A2 9606 - 6:33162681-33192499 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000341947 COL11A2-201 33162692-33192468 protein_coding
  ENST00000361917 COL11A2-202 33162692-33192468 protein_coding
  ENST00000374708 COL11A2-001 33162681-33192499 protein_coding
  ENST00000395194 COL11A2-003 33186445-33192454 protein_coding
  ENST00000457788 COL11A2-002 33178132-33192467 protein_coding
  ENST00000477772 COL11A2-004 33162695-33177893 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341947ENST00000361917ENST00000374708ENST00000395194ENST00000457788ENST00000477772
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341947 N/A N/A N/A N/A N/A N/A 0.128±0.00 0.367±0.00 N/A 0.403±0.00 N/A N/A
ENST00000361917 0.162±0.00 N/A 0.043±0.00 N/A 0.093±0.08 0.072±0.00 0.029±0.00 0.383±0.00 N/A 0.156±0.02 0.040±0.01 0.447±0.00
ENST00000374708 N/A 0.194±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000395194 N/A N/A 0.104±0.00 0.034±0.00 N/A N/A N/A N/A 0.077±0.00 0.351±0.00 0.029±0.00 0.468±0.00
ENST00000457788 N/A 0.205±0.00 0.213±0.00 0.029±0.00 N/A 0.221±0.00 N/A N/A N/A N/A N/A N/A
ENST00000477772 N/A N/A N/A 0.033±0.00 0.018±0.00 0.069±0.00 0.058±0.00 N/A 0.030±0.00 0.199±0.00 0.030±0.01 0.285±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PH CIL_0001PH_0002 CGP 6:33162681-33200688

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001503 IEA ossification
GO:0001894 IEA tissue homeostasis
GO:0002062 IEA chondrocyte differentiation
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005592 NAS collagen type XI trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005840 IEA ribosome
GO:0007605 IMP sensory perception of sound
GO:0022617 TAS extracellular matrix disassembly
GO:0030020 NAS extracellular matrix structural constituent conferring tensile strength
GO:0030198 TAS extracellular matrix organization
GO:0030199 IDA collagen fibril organization
GO:0030574 TAS collagen catabolic process
GO:0030674 NAS protein binding, bridging
GO:0046872 IEA metal ion binding
GO:0048705 IEA skeletal system morphogenesis
GO:0051216 IMP cartilage development
GO:0060021 IMP palate development
GO:0060023 IMP soft palate development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012422 col11a2 collagen type XI alpha-2 protein_coding Danio_rerio
ENSMUSG00000024330 Col11a2 collagen, type XI, alpha 2 protein_coding Mus_musculus

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