C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XI, alpha 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000143354 Col11a2-003 ENSMUSG00000024330 10090 + 17:34048280-34059952 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonKidneyLiverOvaryPlacentaTestisENSMUST00000143354
Transcript ID Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000143354 0.232±0.00 0.070±0.00 0.051±0.00 1.380±0.00 0.743±0.11 0.554±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001894 IMP tissue homeostasis
GO:0002062 IMP chondrocyte differentiation
GO:0005201 IC extracellular matrix structural constituent
GO:0005581 IDA collagen trimer
GO:0007605 IMP sensory perception of sound
GO:0030199 IMP collagen fibril organization
GO:0048705 IMP skeletal system morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341947 COL11A2-201 protein_coding Homo_sapiens 0 2952
ENST00000361917 COL11A2-202 protein_coding Homo_sapiens 0 2953
ENST00000374708 COL11A2-001 protein_coding Homo_sapiens 0 2953
ENST00000383087 COL11A2-001 protein_coding Homo_sapiens 0 2948
ENST00000383219 COL11A2-001 protein_coding Homo_sapiens 0 2953
ENST00000420405 COL11A2-002 protein_coding Homo_sapiens 0 942
ENST00000425729 COL11A2-001 protein_coding Homo_sapiens 0 2953
ENST00000433947 COL11A2-004 protein_coding Homo_sapiens 0 228
ENST00000438711 COL11A2-002 protein_coding Homo_sapiens 0 942
ENST00000443125 COL11A2-004 protein_coding Homo_sapiens 0 228
ENST00000443138 COL11A2-001 protein_coding Homo_sapiens 0 2953
ENST00000447349 COL11A2-001 protein_coding Homo_sapiens 0 2948
ENST00000447855 COL11A2-002 protein_coding Homo_sapiens 0 942
ENST00000448717 COL11A2-001 protein_coding Homo_sapiens 0 2953
ENST00000451040 COL11A2-002 protein_coding Homo_sapiens 0 942
ENST00000452044 COL11A2-002 protein_coding Homo_sapiens 0 942
ENST00000452730 COL11A2-002 protein_coding Homo_sapiens 0 942
ENST00000457788 COL11A2-002 protein_coding Homo_sapiens 0 942
ENST00000477772 COL11A2-004 processed_transcript Homo_sapiens 0 228
ENST00000486982 COL11A2-004 processed_transcript Homo_sapiens 0 228
ENST00000494246 COL11A2-004 processed_transcript Homo_sapiens 0 228
ENST00000496392 COL11A2-004 processed_transcript Homo_sapiens 0 228
ENST00000496849 COL11A2-004 processed_transcript Homo_sapiens 0 228
ENST00000549491 COL11A2-203 protein_coding Homo_sapiens 0 2953
ENST00000549811 COL11A2-207 protein_coding Homo_sapiens 0 2946
ENST00000549836 COL11A2-204 protein_coding Homo_sapiens 0 2952
ENST00000549885 COL11A2-211 protein_coding Homo_sapiens 0 2946
ENST00000550998 COL11A2-209 protein_coding Homo_sapiens 0 2953
ENST00000551413 COL11A2-205 protein_coding Homo_sapiens 0 2952
ENST00000551542 COL11A2-208 protein_coding Homo_sapiens 0 2948
ENST00000551758 COL11A2-210 protein_coding Homo_sapiens 0 2952
ENST00000552134 COL11A2-206 protein_coding Homo_sapiens 0 2953
ENST00000552473 COL11A2-212 protein_coding Homo_sapiens 0 2948

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