C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: negative elongation factor complex member E, Rdbp
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024369 Nelfe 10090 + 17:34850391-34856372 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000097343 Nelfe-201 34850391-34856369 protein_coding
  ENSMUST00000165953 Nelfe-002 34850408-34856372 protein_coding
  ENSMUST00000173065 Nelfe-003 34850408-34854089 protein_coding
  ENSMUST00000173357 Nelfe-001 34850398-34856254 protein_coding
  ENSMUST00000173775 Nelfe-005 34852608-34853869 retained_intron
  ENSMUST00000174075 Nelfe-004 34854256-34854754 retained_intron
  ENSMUST00000174888 Nelfe-006 34853936-34854526 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097343ENSMUST00000165953ENSMUST00000173065ENSMUST00000173357ENSMUST00000174888
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097343 2.098±0.39 1.569±0.44 N/A 1.808±0.17 2.029±0.43 2.543±0.72 0.704±0.00 1.834±0.57 1.853±0.90 1.657±0.45 0.727±0.23 3.621±0.76 N/A 10.578±1.79
ENSMUST00000165953 5.530±0.86 N/A 11.116±1.15 6.253±2.67 4.173±3.30 3.002±0.74 0.962±0.29 4.320±0.81 6.665±3.88 2.261±0.76 2.400±0.95 11.035±8.88 16.348±8.40 22.749±3.12
ENSMUST00000173065 N/A 3.254±0.12 N/A 11.073±7.99 N/A 3.096±0.00 N/A N/A N/A N/A 1.269±0.00 26.688±0.00 32.376±9.96 114.100±0.00
ENSMUST00000173357 5.794±1.02 5.786±0.56 5.737±0.44 2.829±0.11 5.916±0.93 6.959±1.20 2.917±0.37 4.733±0.92 5.784±2.68 4.821±0.49 1.489±0.48 6.852±1.89 11.358±4.12 38.123±14.89
ENSMUST00000174888 N/A 5.289±0.00 N/A 12.310±2.29 N/A N/A N/A N/A 12.963±0.00 N/A 2.556±0.00 35.029±2.32 46.479±13.28 92.870±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002RU CIL_0002RU_0002 CGP 17:34839228-34856372

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0032021 ISS NELF complex
GO:0034244 IMP negative regulation of transcription elongation from RNA polymerase II promoter
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004343 nelfe negative elongation factor complex member E protein_coding Danio_rerio
ENSG00000204356 NELFE negative elongation factor complex member E protein_coding Homo_sapiens

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