C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: negative elongation factor complex member E, Rdbp
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165953 Nelfe-002 ENSMUSG00000024369 10090 + 17:34850408-34856372 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165953
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165953 5.530±0.86 11.116±1.15 6.253±2.67 4.173±3.30 3.002±0.74 0.962±0.29 4.320±0.81 6.665±3.88 2.261±0.76 2.400±0.95 11.035±8.88 16.348±8.40 22.749±3.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002RU CIL_0002RU_0002 CGP 17:34839228-34856372

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0032021 ISS NELF complex
GO:0034244 IMP negative regulation of transcription elongation from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375425 NELFE-013 protein_coding Homo_sapiens 0 1362
ENST00000375429 NELFE-001 protein_coding Homo_sapiens 0 1459
ENST00000383174 NELFE-001 protein_coding Homo_sapiens 0 1459
ENST00000383343 NELFE-001 protein_coding Homo_sapiens 0 1459
ENST00000411745 NELFE-011 protein_coding Homo_sapiens 0 920
ENST00000418059 NELFE-009 protein_coding Homo_sapiens 0 621
ENST00000418423 NELFE-010 protein_coding Homo_sapiens 0 673
ENST00000420039 NELFE-009 protein_coding Homo_sapiens 0 621
ENST00000420837 NELFE-009 protein_coding Homo_sapiens 0 621
ENST00000424762 NELFE-007 protein_coding Homo_sapiens 0 1051
ENST00000424967 NELFE-010 protein_coding Homo_sapiens 0 673
ENST00000425721 NELFE-009 protein_coding Homo_sapiens 0 621
ENST00000425810 NELFE-007 protein_coding Homo_sapiens 0 1051
ENST00000426722 NELFE-009 protein_coding Homo_sapiens 0 621
ENST00000429857 NELFE-001 protein_coding Homo_sapiens 0 1459
ENST00000434518 NELFE-011 protein_coding Homo_sapiens 0 920
ENST00000435435 NELFE-010 protein_coding Homo_sapiens 0 673
ENST00000436289 NELFE-010 protein_coding Homo_sapiens 0 715
ENST00000437732 NELFE-011 protein_coding Homo_sapiens 0 920
ENST00000440478 NELFE-007 protein_coding Homo_sapiens 0 1051
ENST00000441998 NELFE-007 protein_coding Homo_sapiens 0 1051
ENST00000443464 NELFE-007 protein_coding Homo_sapiens 0 1051
ENST00000444811 NELFE-012 protein_coding Homo_sapiens 0 726
ENST00000448628 NELFE-001 protein_coding Homo_sapiens 0 1459
ENST00000449057 NELFE-010 protein_coding Homo_sapiens 0 673
ENST00000452147 NELFE-007 protein_coding Homo_sapiens 0 1051
ENST00000453084 NELFE-011 protein_coding Homo_sapiens 0 920
ENST00000454913 NELFE-011 protein_coding Homo_sapiens 0 920
ENST00000456263 NELFE-011 protein_coding Homo_sapiens 0 920
ENST00000456281 NELFE-010 protein_coding Homo_sapiens 0 673
ENST00000457397 NELFE-001 protein_coding Homo_sapiens 0 1459
ENST00000458622 NELFE-009 protein_coding Homo_sapiens 0 621
ENST00000459932 NELFE-003 retained_intron Homo_sapiens 0 839
ENST00000460970 NELFE-008 processed_transcript Homo_sapiens 0 383
ENST00000463036 NELFE-005 processed_transcript Homo_sapiens 0 448
ENST00000463283 NELFE-003 retained_intron Homo_sapiens 0 839
ENST00000463500 NELFE-002 retained_intron Homo_sapiens 0 1040
ENST00000464892 NELFE-008 processed_transcript Homo_sapiens 0 383
ENST00000465693 NELFE-006 retained_intron Homo_sapiens 0 346
ENST00000466286 NELFE-004 retained_intron Homo_sapiens 0 556
ENST00000466654 NELFE-002 retained_intron Homo_sapiens 0 1040
ENST00000467338 NELFE-008 processed_transcript Homo_sapiens 0 383
ENST00000471024 NELFE-004 retained_intron Homo_sapiens 0 556
ENST00000471034 NELFE-005 processed_transcript Homo_sapiens 0 448
ENST00000471130 NELFE-004 retained_intron Homo_sapiens 0 556
ENST00000472314 NELFE-003 retained_intron Homo_sapiens 0 839
ENST00000472316 NELFE-008 processed_transcript Homo_sapiens 0 383
ENST00000478154 NELFE-005 processed_transcript Homo_sapiens 0 448
ENST00000478280 NELFE-004 retained_intron Homo_sapiens 0 556
ENST00000479908 NELFE-006 retained_intron Homo_sapiens 0 346
ENST00000481121 NELFE-002 retained_intron Homo_sapiens 0 1040
ENST00000482784 NELFE-002 retained_intron Homo_sapiens 0 1040
ENST00000482909 NELFE-006 retained_intron Homo_sapiens 0 346
ENST00000484053 NELFE-006 retained_intron Homo_sapiens 0 346
ENST00000485782 NELFE-002 retained_intron Homo_sapiens 0 1040
ENST00000485872 NELFE-002 retained_intron Homo_sapiens 0 1040
ENST00000486359 NELFE-004 retained_intron Homo_sapiens 0 556
ENST00000488291 NELFE-006 retained_intron Homo_sapiens 0 346
ENST00000488426 NELFE-003 retained_intron Homo_sapiens 0 839
ENST00000491139 NELFE-006 retained_intron Homo_sapiens 0 346
ENST00000492185 NELFE-004 retained_intron Homo_sapiens 0 556
ENST00000492186 NELFE-008 processed_transcript Homo_sapiens 0 383
ENST00000492539 NELFE-005 nonsense_mediated_decay Homo_sapiens 0 448
ENST00000493221 NELFE-005 processed_transcript Homo_sapiens 0 448
ENST00000494485 NELFE-003 retained_intron Homo_sapiens 0 839
ENST00000494956 NELFE-008 nonsense_mediated_decay Homo_sapiens 0 401
ENST00000496691 NELFE-003 retained_intron Homo_sapiens 0 839
ENST00000497132 NELFE-005 processed_transcript Homo_sapiens 0 448

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