C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAB3A interacting protein (rabin3)-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024663 Rab3il1 10090 + 19:10001669-10038380 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000113161 Rab3il1-004 10018193-10035456 protein_coding
  ENSMUST00000117641 Rab3il1-003 10018194-10035455 protein_coding
  ENSMUST00000121418 Rab3il1-001 10001669-10035586 protein_coding
  ENSMUST00000129882 Rab3il1-008 10031670-10033810 retained_intron
  ENSMUST00000131407 Rab3il1-007 10018265-10028308 protein_coding
  ENSMUST00000137637 Rab3il1-005 10015016-10027576 protein_coding
  ENSMUST00000144788 Rab3il1-002 10018194-10038380 nonsense_mediated_decay
  ENSMUST00000149967 Rab3il1-006 10015044-10027477 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113161ENSMUST00000117641ENSMUST00000121418ENSMUST00000131407ENSMUST00000144788ENSMUST00000149967
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113161 8.093±0.68 1.560±0.48 5.343±0.00 3.121±0.54 9.462±1.07 2.405±0.60 2.048±0.89 6.881±1.57 18.510±19.78 2.609±0.99 1.117±0.46 5.657±2.36 6.484±4.72 48.640±13.33
ENSMUST00000117641 6.885±2.09 3.917±0.39 2.739±0.00 2.111±0.26 10.513±1.88 2.329±0.41 1.749±0.21 7.002±2.44 17.301±15.65 2.433±0.60 0.778±0.32 7.060±2.65 3.284±1.83 N/A
ENSMUST00000121418 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 83.514±25.46
ENSMUST00000131407 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 111.669±0.00
ENSMUST00000144788 N/A N/A N/A 0.965±0.12 2.651±0.00 0.959±0.00 0.676±0.00 N/A 0.192±0.00 0.755±0.00 0.370±0.07 2.600±0.76 0.514±0.00 N/A
ENSMUST00000149967 N/A N/A N/A N/A N/A N/A N/A 14.812±4.76 37.719±24.98 N/A N/A N/A 12.386±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000056 CIL_000056_0002 CGP 19:9985174-10038380

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0015031 IEA protein transport
GO:0017112 ISS Rab guanyl-nucleotide exchange factor activity
GO:0032851 ISS positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007711 RAB3IL1 RAB3A interacting protein (rabin3)-like 1 protein_coding Danio_rerio
ENSG00000167994 RAB3IL1 RAB3A interacting protein (rabin3)-like 1 protein_coding Homo_sapiens

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