C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 89, member B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000024939 Fam89b 10090 - 19:5728087-5729653 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000099955 Fam89b-001 5728087-5729651 protein_coding
  ENSMUST00000116558 Fam89b-002 5728087-5729633 protein_coding
  ENSMUST00000161368 Fam89b-003 5728087-5729653 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099955ENSMUST00000116558ENSMUST00000161368
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099955 62.058±4.72 113.621±15.47 28.997±4.89 68.040±46.49 95.676±39.33 41.676±3.09 23.661±4.39 29.593±5.27 24.174±11.35 86.040±12.95 11.552±2.65 94.992±28.54 9.783±4.27 81.143±5.18
ENSMUST00000116558 13.806±1.67 22.438±1.94 N/A N/A 21.830±9.44 10.766±0.24 N/A 8.392±1.62 N/A 21.309±0.02 3.514±0.00 27.335±8.22 N/A 13.000±7.38
ENSMUST00000161368 12.470±0.65 18.344±0.00 N/A 32.383±0.00 5.938±0.00 N/A 5.637±0.00 7.377±0.00 17.182±0.00 N/A 4.060±0.67 20.618±1.14 N/A 25.792±2.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0002 VISTA 19:5510095-6112698

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001222 IDA transcription corepressor binding
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0030512 IDA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0060392 IDA negative regulation of SMAD protein import into nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069106 fam89b family with sequence similarity 89, member B protein_coding Danio_rerio
ENSG00000176973 FAM89B family with sequence similarity 89, member B protein_coding Homo_sapiens

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