C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025077 Dclre1a 10090 - 19:56529167-56548222 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000181992 Dclre1a-005 56540011-56541545 processed_transcript
  ENSMUST00000182058 Dclre1a-003 56529169-56547155 retained_intron
  ENSMUST00000182059 Dclre1a-004 56546858-56548026 protein_coding
  ENSMUST00000182276 Dclre1a-001 56529169-56548222 protein_coding
  ENSMUST00000183143 Dclre1a-002 56529167-56548147 nonsense_mediated_decay
  ENSMUST00000183216 Dclre1a-006 56529582-56537382 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000182058ENSMUST00000182276ENSMUST00000183143ENSMUST00000183216
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000182058 0.591±0.00 0.548±0.24 N/A 0.379±0.00 0.644±0.09 0.965±0.35 0.436±0.03 0.459±0.13 0.410±0.03 0.627±0.10 0.145±0.05 1.222±0.50 0.558±0.09 0.298±0.05
ENSMUST00000182276 3.009±1.00 1.407±0.41 2.241±0.20 2.226±0.08 1.877±0.44 2.026±0.71 1.377±0.24 2.480±0.21 3.717±2.40 2.021±0.51 0.384±0.14 2.687±1.35 1.734±0.37 0.810±0.28
ENSMUST00000183143 0.486±0.00 0.420±0.02 N/A 0.304±0.00 0.348±0.00 0.614±0.00 N/A 0.363±0.04 N/A 0.508±0.06 0.126±0.00 0.551±0.00 N/A N/A
ENSMUST00000183216 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.728±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QZ CIL_0001QZ_0003 CGP 19:56461637-56548222
CIL_0001QY CIL_0001QY_0003 CGP 19:56529167-56598846

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 ISA nucleus
GO:0006289 IMP nucleotide-excision repair

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053776 dclre1a DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae) protein_coding Danio_rerio
ENSG00000198924 DCLRE1A DNA cross-link repair 1A protein_coding Homo_sapiens

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