C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: katanin p60 subunit A-like 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025420 Katnal2 10090 - 18:76977148-77047308 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026486 Katnal2-005 76993199-77047296 protein_coding
  ENSMUST00000122984 Katnal2-003 76977149-77047286 nonsense_mediated_decay
  ENSMUST00000123650 Katnal2-007 77010533-77047298 protein_coding
  ENSMUST00000125744 Katnal2-010 77001693-77012031 processed_transcript
  ENSMUST00000126153 Katnal2-001 76977148-77047308 protein_coding
  ENSMUST00000135029 Katnal2-002 76977149-77047243 nonsense_mediated_decay
  ENSMUST00000137354 Katnal2-008 76977157-77047243 protein_coding
  ENSMUST00000137498 Katnal2-004 76977151-77047270 protein_coding
  ENSMUST00000138336 Katnal2-009 77002541-77008202 retained_intron
  ENSMUST00000154053 Katnal2-011 76978461-77006872 processed_transcript
  ENSMUST00000154665 Katnal2-006 77010041-77047287 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026486ENSMUST00000123650ENSMUST00000125744ENSMUST00000126153ENSMUST00000135029ENSMUST00000137354ENSMUST00000137498ENSMUST00000138336ENSMUST00000154053ENSMUST00000154665
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026486 N/A N/A N/A N/A N/A 0.161±0.00 0.028±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123650 N/A N/A N/A N/A N/A N/A N/A 0.075±0.00 N/A N/A 0.106±0.01 N/A N/A N/A
ENSMUST00000125744 N/A N/A N/A N/A N/A 0.096±0.00 N/A 0.113±0.00 N/A N/A 0.185±0.03 0.576±0.00 N/A N/A
ENSMUST00000126153 0.263±0.08 0.264±0.04 N/A 1.625±0.14 0.218±0.16 N/A N/A 0.074±0.00 0.092±0.06 0.218±0.12 0.097±0.00 0.766±0.37 0.396±0.18 27.155±8.86
ENSMUST00000135029 0.140±0.00 N/A 0.074±0.00 N/A 0.158±0.00 N/A N/A 0.037±0.01 0.030±0.01 0.238±0.08 0.071±0.00 0.428±0.32 0.176±0.11 N/A
ENSMUST00000137354 N/A 0.088±0.00 N/A 1.234±0.00 0.153±0.00 0.092±0.02 N/A 0.066±0.00 N/A N/A 0.179±0.01 0.392±0.17 N/A N/A
ENSMUST00000137498 0.224±0.00 0.168±0.00 N/A N/A 0.179±0.10 N/A N/A 0.091±0.00 0.015±0.00 N/A 0.087±0.01 0.551±0.34 0.575±0.00 N/A
ENSMUST00000138336 N/A 0.360±0.00 N/A N/A 0.362±0.00 0.153±0.00 N/A N/A N/A 0.413±0.00 0.138±0.04 N/A N/A N/A
ENSMUST00000154053 0.387±0.00 0.593±0.23 N/A N/A 0.586±0.32 0.302±0.14 0.137±0.07 0.182±0.08 0.131±0.00 0.514±0.19 0.327±0.00 1.282±0.43 0.222±0.00 N/A
ENSMUST00000154665 N/A 0.087±0.00 0.059±0.00 1.672±0.04 0.150±0.03 0.069±0.00 N/A 0.039±0.00 0.078±0.04 N/A 0.072±0.00 0.626±0.29 0.179±0.03 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DZ CIL_0008DZ_0002 VISTA 18:76562703-77163723

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0006200 IEA ATP catabolic process
GO:0008017 IEA microtubule binding
GO:0008150 ND biological_process
GO:0008568 IEA microtubule-severing ATPase activity
GO:0051013 IEA microtubule severing

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012275 katnal2 katanin p60 subunit A-like 2 protein_coding Danio_rerio
ENSG00000167216 KATNAL2 katanin p60 subunit A-like 2 protein_coding Homo_sapiens

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