C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin-related family member 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025497 Cdhr5 10090 - 7:141269085-141276786 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000080654 Cdhr5-201 141269085-141276786 protein_coding
  ENSMUST00000167263 Cdhr5-202 141269085-141276786 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080654ENSMUST00000167263
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080654 0.081±0.04 4.066±1.17 0.004±0.00 0.010±0.00 0.173±0.12 77.146±21.01 0.015±0.01 19.114±2.84 3.944±3.91 0.251±0.23 0.043±0.02 0.456±0.31 3.967±0.82 0.253±0.03
ENSMUST00000167263 0.033±0.02 1.654±1.03 0.012±0.00 0.017±0.00 0.089±0.04 93.412±14.74 N/A 18.818±3.84 3.073±2.18 0.221±0.10 N/A 0.422±0.35 4.448±2.72 0.115±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003OO CIL_0003OO_0002 CGP 7:141262706-141276786
CIL_0003ON CIL_0003ON_0002 CGP 7:141269085-141279133

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 ISS calcium ion binding
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007155 ISS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008013 IEA beta-catenin binding
GO:0016021 IEA integral component of membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087126 cdhr5b cadherin-related family member 5b protein_coding Danio_rerio
ENSDARG00000090275 CDHR5 (2 of 2) cadherin-related family member 5 protein_coding Danio_rerio
ENSG00000099834 CDHR5 cadherin-related family member 5 protein_coding Homo_sapiens

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