C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin-related family member 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000099834 CDHR5 9606 - 11:616565-626078 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000349570 CDHR5-002 617256-625169 protein_coding
  ENST00000358353 CDHR5-001 616577-626078 protein_coding
  ENST00000397542 CDHR5-201 616565-625067 protein_coding
  ENST00000526077 CDHR5-008 621217-624955 protein_coding
  ENST00000529337 CDHR5-010 624213-625169 processed_transcript
  ENST00000531088 CDHR5-006 621420-624955 protein_coding
  ENST00000531177 CDHR5-004 617256-624932 nonsense_mediated_decay
  ENST00000531899 CDHR5-005 619416-624955 retained_intron
  ENST00000532949 CDHR5-009 619688-621137 processed_transcript
  ENST00000534311 CDHR5-007 621397-624955 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000349570ENST00000358353ENST00000397542ENST00000531088ENST00000531177ENST00000531899ENST00000532949ENST00000534311
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000349570 N/A N/A N/A N/A N/A N/A N/A 10.938±0.00 0.029±0.00 1.554±1.12 N/A N/A
ENST00000358353 N/A N/A N/A 0.076±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397542 N/A 4.129±0.00 0.016±0.00 1.713±0.00 3.711±1.55 0.032±0.00 6.713±3.20 12.048±11.91 N/A 1.694±1.41 N/A 0.215±0.00
ENST00000531088 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.191±0.00 0.089±0.00 N/A
ENST00000531177 N/A N/A N/A N/A N/A 0.024±0.00 11.708±0.00 N/A N/A 1.225±0.00 0.029±0.00 0.077±0.00
ENST00000531899 N/A N/A N/A N/A 3.097±0.00 N/A 15.996±0.00 N/A 0.068±0.00 N/A N/A N/A
ENST00000532949 0.148±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.855±0.00
ENST00000534311 N/A N/A 0.307±0.00 N/A N/A N/A N/A N/A N/A 3.987±0.00 0.070±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003OO CIL_0003OO_0001 CGP 11:612553-626078
CIL_0003ON CIL_0003ON_0001 CGP 11:616565-627143

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007155 ISS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008013 IPI beta-catenin binding
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087126 cdhr5b cadherin-related family member 5b protein_coding Danio_rerio
ENSDARG00000090275 CDHR5 (2 of 2) cadherin-related family member 5 protein_coding Danio_rerio
ENSMUSG00000025497 Cdhr5 cadherin-related family member 5 protein_coding Mus_musculus

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