C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026635 Farp1-001 ENSMUSG00000025555 10090 + 14:121035564-121283744 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026635
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026635 6.891±1.23 0.617±0.02 19.688±5.07 11.387±4.11 3.299±1.98 3.690±0.90 1.653±0.00 7.674±2.75 2.571±1.46 11.610±2.29 0.640±0.19 5.554±2.91 5.539±2.85 0.149±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004FZ CIL_0004FZ_0003 CGP 14:120911194-121283744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005829 ISS cytosol
GO:0005856 IEA cytoskeleton
GO:0007416 ISS synapse assembly
GO:0008092 IEA cytoskeletal protein binding
GO:0030054 IEA cell junction
GO:0030425 ISS dendrite
GO:0030676 ISS Rac guanyl-nucleotide exchange factor activity
GO:0031234 ISS extrinsic component of cytoplasmic side of plasma membrane
GO:0032855 ISS positive regulation of Rac GTPase activity
GO:0045202 IEA synapse
GO:0048365 IEA Rac GTPase binding
GO:0048813 ISS dendrite morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000108619 farp1-201 protein_coding Danio_rerio 0 920
ENSDART00000142944 farp1-004 protein_coding Danio_rerio 0 907
ENST00000319562 FARP1-001 protein_coding Homo_sapiens 0 3439
ENST00000457029 FARP1-003 processed_transcript Homo_sapiens 0 560
ENST00000539966 STK24-001 protein_coding Homo_sapiens 5e-30 139
ENST00000594346 FARP1-019 retained_intron Homo_sapiens 1e-30 139
ENST00000595380 FARP1-033 processed_transcript Homo_sapiens 0 427
ENST00000595437 FARP1-011 protein_coding Homo_sapiens 0 2327
ENST00000595817 FARP1-040 processed_transcript Homo_sapiens 0 453
ENST00000596256 FARP1-013 protein_coding Homo_sapiens 0 520
ENST00000596467 FARP1-034 retained_intron Homo_sapiens 0 662
ENST00000596613 FARP1-027 processed_transcript Homo_sapiens 0 353
ENST00000598389 FARP1-039 protein_coding Homo_sapiens 0 675
ENST00000599040 FARP1-016 protein_coding Homo_sapiens 0 579
ENST00000600032 FARP1-028 processed_transcript Homo_sapiens 0 453
ENST00000601009 FARP1-038 protein_coding Homo_sapiens 0 562
ENST00000601853 FARP1-032 processed_transcript Homo_sapiens 0 353
ENST00000602263 FARP1-041 processed_transcript Homo_sapiens 0 599

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