C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NOP16 nucleolar protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025869 Nop16 10090 - 13:54584185-54590090 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026987 Nop16-001 54584185-54590090 protein_coding
  ENSMUST00000148222 Nop16-003 54584536-54590058 protein_coding
  ENSMUST00000149462 Nop16-002 54585239-54589976 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026987ENSMUST00000148222ENSMUST00000149462
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026987 5.583±1.36 2.221±0.50 9.840±0.92 3.875±0.00 3.676±0.88 2.762±0.39 2.522±0.17 5.197±1.24 9.058±6.92 2.828±0.50 6.400±1.03 5.092±2.80 12.535±5.17 1.009±0.00
ENSMUST00000148222 2.946±0.76 1.927±0.45 5.208±1.08 10.066±0.00 1.544±0.00 3.285±1.46 1.661±0.13 5.039±1.16 6.045±3.25 2.386±0.76 4.082±0.67 6.662±3.71 14.049±8.53 6.323±0.00
ENSMUST00000149462 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.311±3.78 14.744±8.21 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0002 VISTA 13:54491283-55092527
CIL_0000P0 CIL_0000P0_0003 CGP 13:54575015-54590090
CIL_0002N9 CIL_0002N9_0002 CGP 13:54584185-54591158

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0008150 ND biological_process
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044402 nop16 NOP16 nucleolar protein homolog (yeast) protein_coding Danio_rerio
ENSG00000048162 NOP16 NOP16 nucleolar protein protein_coding Homo_sapiens

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