C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NOP16 nucleolar protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026987 Nop16-001 ENSMUSG00000025869 10090 - 13:54584185-54590090 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026987
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026987 5.583±1.36 2.221±0.50 9.840±0.92 3.875±0.00 3.676±0.88 2.762±0.39 2.522±0.17 5.197±1.24 9.058±6.92 2.828±0.50 6.400±1.03 5.092±2.80 12.535±5.17 1.009±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0002 VISTA 13:54491283-55092527
CIL_0000P0 CIL_0000P0_0003 CGP 13:54575015-54590090
CIL_0002N9 CIL_0002N9_0002 CGP 13:54584185-54591158

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0008150 ND biological_process
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000502577 NOP16-007 retained_intron Homo_sapiens 2e-37 159
ENST00000502663 NOP16-005 nonsense_mediated_decay Homo_sapiens 0 291
ENST00000503175 ARL10-003 protein_coding Homo_sapiens 1e-37 159
ENST00000503849 NOP16-004 retained_intron Homo_sapiens 2e-37 159
ENST00000504821 NOP16-006 retained_intron Homo_sapiens 2e-37 159
ENST00000509257 NOP16-009 protein_coding Homo_sapiens 0 494
ENST00000510608 NOP16-003 retained_intron Homo_sapiens 0 346
ENST00000613081 NOP16-201 protein_coding Homo_sapiens 0 652
ENST00000614830 NOP16-001 protein_coding Homo_sapiens 0 667
ENST00000616685 NOP16-008 protein_coding Homo_sapiens 2e-37 159
ENST00000618911 NOP16-202 protein_coding Homo_sapiens 0 494
ENST00000619979 NOP16-203 protein_coding Homo_sapiens 0 494
ENST00000621444 NOP16-002 protein_coding Homo_sapiens 0 494

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