C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NOP16 nucleolar protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000048162 NOP16 9606 - 5:176383938-176388975 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000502577 NOP16-007 176385941-176388598 retained_intron
  ENST00000502663 NOP16-005 176384208-176388587 nonsense_mediated_decay
  ENST00000503849 NOP16-004 176384334-176388598 retained_intron
  ENST00000504821 NOP16-006 176384362-176388571 retained_intron
  ENST00000509257 NOP16-009 176384643-176388568 protein_coding
  ENST00000510608 NOP16-003 176386024-176388598 retained_intron
  ENST00000613081 NOP16-201 176383947-176388927 protein_coding
  ENST00000614830 NOP16-001 176383946-176388975 protein_coding
  ENST00000616685 NOP16-008 176383958-176388575 protein_coding
  ENST00000618911 NOP16-202 176383981-176388927 protein_coding
  ENST00000619979 NOP16-203 176383938-176388762 protein_coding
  ENST00000621444 NOP16-002 176383946-176388762 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000502663ENST00000510608ENST00000613081
Transcript ID Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000502663 N/A N/A N/A N/A N/A N/A N/A 10.343±0.00 N/A N/A
ENST00000510608 1.205±0.00 1.316±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613081 N/A 5.652±4.69 0.613±0.00 6.807±4.70 12.804±0.00 0.971±0.00 9.792±8.32 7.294±0.00 9.940±6.41 4.006±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DL CIL_0002DL_0001 CGP 5:176346061-176401865
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0000P0 CIL_0000P0_0002 CGP 5:176365468-176401865
CIL_0002N9 CIL_0002N9_0001 CGP 5:176383938-176389771

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044402 nop16 NOP16 nucleolar protein homolog (yeast) protein_coding Danio_rerio
ENSMUSG00000025869 Nop16 NOP16 nucleolar protein protein_coding Mus_musculus

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