C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: musculin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025930 Msc 10090 - 1:14753346-14755992 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027062 Msc-001 14753346-14755990 protein_coding
  ENSMUST00000188982 Msc-004 14753935-14754665 retained_intron
  ENSMUST00000190471 Msc-002 14754767-14755992 retained_intron
  ENSMUST00000190719 Msc-003 14753746-14755353 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027062ENSMUST00000188982ENSMUST00000190471ENSMUST00000190719
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027062 2.258±0.73 0.107±0.04 0.380±0.08 0.491±0.07 6.318±1.20 0.709±0.13 1.353±0.57 0.195±0.14 0.270±0.16 0.829±0.10 0.532±0.21 0.972±0.37 0.323±0.15 0.085±0.01
ENSMUST00000188982 N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.01 N/A 0.315±0.07 0.528±0.15 0.380±0.21 0.066±0.00
ENSMUST00000190471 1.016±0.35 0.079±0.04 0.389±0.00 0.175±0.00 3.885±0.90 0.624±0.14 0.556±0.00 0.112±0.07 0.173±0.11 0.513±0.09 0.194±0.09 0.749±0.31 0.171±0.04 0.097±0.04
ENSMUST00000190719 N/A N/A N/A 1.078±0.00 N/A N/A N/A 0.211±0.10 N/A N/A 0.278±0.08 0.738±0.15 0.247±0.00 0.140±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003F4 CIL_0003F4_0002 CGP 1:14168954-14755992
CIL_0003FQ CIL_0003FQ_0002 CGP 1:14753346-14918862

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001206 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0014707 IGI branchiomeric skeletal muscle development
GO:0046983 IEA protein dimerization activity
GO:0060021 IGI palate development
GO:0060539 IGI diaphragm development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000178860 MSC musculin protein_coding Homo_sapiens

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