C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003FQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000178860-ENSG00000104321 CGP 9606 8:71841549-72075617
GeneTranscriptPositionBiotype
ENSG00000104321 (TRPA1)
transient receptor potential cation channel, subfamily A, member 1 		ENST00000262209 (TRPA1-001) 72021251-72075617 protein_coding
ENST00000519720 (TRPA1-006) 72034310-72041345 processed_transcript
ENST00000520596 (TRPA1-007) 72023129-72023870 processed_transcript
ENST00000520788 (TRPA1-004) 72053389-72055539 retained_intron
ENST00000522271 (TRPA1-005) 72038766-72046545 retained_intron
ENST00000523582 (TRPA1-002) 72019917-72065558 protein_coding
ENSG00000178860 (MSC)
musculin 		ENST00000325509 (MSC-001) 71841549-71844468 protein_coding
ENST00000518440 (MSC-002) 71842349-71842992 processed_transcript
ENST00000521739 (MSC-003) 71842420-71843413 processed_transcript
ENSG00000241942 (RPS20P20)
ribosomal protein S20 pseudogene 20 		ENST00000460498 (RPS20P20-001) 71895991-71896330 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0003FQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025930-ENSMUSG00000032769 CGP 10090 1:14753346-14918862
GeneTranscriptPositionBiotype
ENSMUSG00000025930 (Msc)
musculin 		ENSMUST00000027062 (Msc-001) 14753346-14755990 protein_coding
ENSMUST00000188982 (Msc-004) 14753935-14754665 retained_intron
ENSMUST00000190471 (Msc-002) 14754767-14755992 retained_intron
ENSMUST00000190719 (Msc-003) 14753746-14755353 protein_coding
ENSMUSG00000032769 (Trpa1)
transient receptor potential cation channel, subfamily A, member 1 		ENSMUST00000041447 (Trpa1-001) 14872648-14918862 protein_coding
ENSMUSG00000054493 (Gm9947)
predicted gene 9947 		ENSMUST00000067599 (Gm9947-001) 14755454-14758373 antisense
ENSMUST00000187401 (Gm9947-002) 14752937-14776931 antisense
ENSMUSG00000081201 (Smt3h2-ps4)
SMT3 suppressor of mif two 3 homolog 2, pseudogene 4 (S. cerevisiae) 		ENSMUST00000121569 (Smt3h2-ps4-001) 14839869-14840156 processed_pseudogene
ENSMUSG00000082193 (Rpl5-ps1)
ribosomal protein L5, pseudogene 1 		ENSMUST00000121367 (Rpl5-ps1-001) 14865072-14865965 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FQ_0001ENSG00000104321ENST00000262209ENST00000519720ENST00000520596ENST00000520788ENST00000522271ENST00000523582ENSG00000178860ENST00000325509ENST00000518440ENST00000521739ENSG00000241942ENST00000460498CIL_0003FQ_0002ENSMUSG00000025930ENSMUST00000027062ENSMUST00000188982ENSMUST00000190471ENSMUST00000190719ENSMUSG00000032769ENSMUST00000041447ENSMUSG00000054493ENSMUST00000067599ENSMUST00000187401ENSMUSG00000081201ENSMUST00000121569ENSMUSG00000082193ENSMUST00000121367
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FQ_0001ENSG00000104321ENST00000262209ENST00000520788ENST00000523582ENSG00000178860ENST00000325509ENSG00000241942ENST00000460498CIL_0003FQ_0002ENSMUSG00000025930ENSMUST00000027062ENSMUST00000188982ENSMUST00000190471ENSMUST00000190719ENSMUSG00000032769ENSMUST00000041447ENSMUSG00000054493ENSMUST00000067599ENSMUST00000187401ENSMUSG00000081201ENSMUST00000121569ENSMUSG00000082193ENSMUST00000121367
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104321 ENST00000262209 N/A N/A 0.068±0.00 N/A 0.733±0.00 1.308±0.83 N/A N/A N/A N/A N/A 1.041±0.46 N/A N/A
ENST00000519720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520596 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000520788 N/A N/A N/A N/A N/A N/A 1.596±0.00 2.472±0.00 0.265±0.00 N/A 0.835±0.00 N/A N/A N/A
ENST00000522271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523582 N/A N/A N/A N/A N/A N/A N/A N/A 4.269±0.00 N/A N/A N/A N/A N/A
ENSG00000178860 ENST00000325509 9.146±0.00 20.313±0.00 N/A 2.858±1.97 10.484±8.39 2.892±0.00 1.839±0.60 3.011±0.00 0.331±0.00 8.971±0.00 0.661±0.19 10.741±6.67 15.582±3.81 10.240±6.74
ENST00000518440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241942 ENST00000460498 N/A N/A N/A 0.066±0.00 N/A N/A N/A N/A 0.264±0.00 N/A N/A 0.159±0.00 N/A 0.082±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025930 ENSMUST00000027062 2.258±0.73 0.107±0.04 0.380±0.08 0.491±0.07 6.318±1.20 0.709±0.13 1.353±0.57 0.195±0.14 0.270±0.16 0.829±0.10 0.532±0.21 0.972±0.37 0.323±0.15 0.085±0.01
ENSMUST00000188982 N/A N/A N/A N/A N/A N/A N/A N/A 0.105±0.01 N/A 0.315±0.07 0.528±0.15 0.380±0.21 0.066±0.00
ENSMUST00000190471 1.016±0.35 0.079±0.04 0.389±0.00 0.175±0.00 3.885±0.90 0.624±0.14 0.556±0.00 0.112±0.07 0.173±0.11 0.513±0.09 0.194±0.09 0.749±0.31 0.171±0.04 0.097±0.04
ENSMUST00000190719 N/A N/A N/A 1.078±0.00 N/A N/A N/A 0.211±0.10 N/A N/A 0.278±0.08 0.738±0.15 0.247±0.00 0.140±0.04
ENSMUSG00000032769 ENSMUST00000041447 0.008±0.00 0.065±0.04 0.020±0.01 0.040±0.01 N/A 0.373±0.12 0.023±0.00 0.008±0.00 0.005±0.00 0.017±0.00 N/A 0.051±0.01 0.025±0.01 0.009±0.00
ENSMUSG00000054493 ENSMUST00000067599 N/A N/A 0.099±0.00 N/A N/A N/A N/A N/A 0.047±0.02 N/A 0.093±0.00 N/A N/A 0.019±0.01
ENSMUST00000187401 N/A N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A 0.380±0.00 0.255±0.09 N/A
ENSMUSG00000081201 ENSMUST00000121569 N/A N/A 4.314±1.26 4.837±3.52 N/A N/A N/A N/A 5.858±3.49 N/A 0.413±0.26 N/A 0.037±0.00 0.623±0.27
ENSMUSG00000082193 ENSMUST00000121367 0.049±0.00 N/A 24.314±3.26 11.441±2.49 N/A N/A 0.048±0.00 0.052±0.00 8.660±13.62 N/A N/A 0.178±0.08 0.073±0.05 0.102±0.00

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