C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: musculin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027062 Msc-001 ENSMUSG00000025930 10090 - 1:14753346-14755990 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027062
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027062 2.258±0.73 0.107±0.04 0.380±0.08 0.491±0.07 6.318±1.20 0.709±0.13 1.353±0.57 0.195±0.14 0.270±0.16 0.829±0.10 0.532±0.21 0.972±0.37 0.323±0.15 0.085±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003F4 CIL_0003F4_0002 CGP 1:14168954-14755992
CIL_0003FQ CIL_0003FQ_0002 CGP 1:14753346-14918862

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001206 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0014707 IGI branchiomeric skeletal muscle development
GO:0046983 IEA protein dimerization activity
GO:0060021 IGI palate development
GO:0060539 IGI diaphragm development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325509 MSC-001 protein_coding Homo_sapiens 0 601

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