C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein tyrosine phosphatase 4a1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026064 Ptp4a1 10090 - 1:30940302-30949770 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027232 Ptp4a1-001 30940302-30949770 protein_coding
  ENSMUST00000076587 Ptp4a1-005 30941580-30949757 protein_coding
  ENSMUST00000124445 Ptp4a1-002 30946167-30949309 processed_transcript
  ENSMUST00000130934 Ptp4a1-004 30943221-30944304 retained_intron
  ENSMUST00000153681 Ptp4a1-003 30941947-30946426 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027232ENSMUST00000076587ENSMUST00000124445
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027232 37.147±12.60 52.993±29.78 14.899±0.27 12.313±7.77 31.317±12.10 35.916±6.53 7.857±1.82 8.346±1.75 12.682±7.13 19.169±7.57 3.591±0.44 34.919±20.11 5.015±4.19 5.196±2.46
ENSMUST00000076587 21.882±8.73 22.105±7.86 20.416±0.51 14.392±5.54 13.334±2.91 11.966±4.27 11.906±1.04 4.008±1.03 11.958±3.57 8.892±1.29 12.665±0.74 13.367±2.98 16.242±5.09 9.776±4.45
ENSMUST00000124445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.619±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004727 TAS prenylated protein tyrosine phosphatase activity
GO:0005737 IEA cytoplasm
GO:0005768 TAS endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005856 IEA cytoskeleton
GO:0005886 TAS plasma membrane
GO:0007049 IEA cell cycle
GO:0007275 IEA multicellular organismal development
GO:0009898 IEA cytoplasmic side of plasma membrane
GO:0030335 IDA positive regulation of cell migration
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000006242 ptp4a1 protein tyrosine phosphatase type IVA, member 1 protein_coding Danio_rerio
ENSG00000112245 PTP4A1 protein tyrosine phosphatase type IVA, member 1 protein_coding Homo_sapiens

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