C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase 4a1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027232 Ptp4a1-001 ENSMUSG00000026064 10090 - 1:30940302-30949770 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027232
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027232 37.147±12.60 52.993±29.78 14.899±0.27 12.313±7.77 31.317±12.10 35.916±6.53 7.857±1.82 8.346±1.75 12.682±7.13 19.169±7.57 3.591±0.44 34.919±20.11 5.015±4.19 5.196±2.46

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004727 TAS prenylated protein tyrosine phosphatase activity
GO:0005737 IEA cytoplasm
GO:0005768 TAS endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005856 IEA cytoskeleton
GO:0005886 TAS plasma membrane
GO:0007049 IEA cell cycle
GO:0007275 IEA multicellular organismal development
GO:0009898 IEA cytoplasmic side of plasma membrane
GO:0030335 IDA positive regulation of cell migration
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148425 ptp4a1-002 protein_coding Danio_rerio 8.96831e-44 183
ENSDART00000026814 ptp4a1-001 protein_coding Danio_rerio 8.96831e-44 183
ENSDART00000151926 ptp4a1-003 protein_coding Danio_rerio 3.99931e-42 178
ENST00000370651 PTP4A1-004 protein_coding Homo_sapiens 0 1868
ENST00000420539 PTP4A1P1-001 processed_pseudogene Homo_sapiens 0 577
ENST00000423476 PTP4A1P7-001 processed_pseudogene Homo_sapiens 0 654
ENST00000470661 PTP4A1-002 processed_transcript Homo_sapiens 0 233
ENST00000473334 PTP4A1-003 processed_transcript Homo_sapiens 0 377
ENST00000512479 PTP4A1P4-001 processed_pseudogene Homo_sapiens 0 396
ENST00000531034 PTP4A1P6-001 transcribed_processed_pseudogene Homo_sapiens 0 488
ENST00000554127 RP11-395B20.2-001 processed_pseudogene Homo_sapiens 5.60519e-45 183
ENST00000578299 PTP4A1-005 protein_coding Homo_sapiens 0 233

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