C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase 4a1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076587 Ptp4a1-005 ENSMUSG00000026064 10090 - 1:30941580-30949757 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076587
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076587 21.882±8.73 22.105±7.86 20.416±0.51 14.392±5.54 13.334±2.91 11.966±4.27 11.906±1.04 4.008±1.03 11.958±3.57 8.892±1.29 12.665±0.74 13.367±2.98 16.242±5.09 9.776±4.45

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004727 TAS prenylated protein tyrosine phosphatase activity
GO:0005768 TAS endosome
GO:0005783 IEA endoplasmic reticulum
GO:0005856 IEA cytoskeleton
GO:0005886 TAS plasma membrane
GO:0007049 IEA cell cycle
GO:0007275 IEA multicellular organismal development
GO:0030335 IDA positive regulation of cell migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148425 ptp4a1-002 protein_coding Danio_rerio 2e-38 165
ENSDART00000026814 ptp4a1-001 protein_coding Danio_rerio 2e-38 165
ENSDART00000151926 ptp4a1-003 protein_coding Danio_rerio 4e-36 158
ENST00000370651 PTP4A1-004 protein_coding Homo_sapiens 0 1868
ENST00000420539 PTP4A1P1-001 processed_pseudogene Homo_sapiens 0 577
ENST00000423476 PTP4A1P7-001 processed_pseudogene Homo_sapiens 0 654
ENST00000470661 PTP4A1-002 processed_transcript Homo_sapiens 0 233
ENST00000473334 PTP4A1-003 processed_transcript Homo_sapiens 0 377
ENST00000512479 PTP4A1P4-001 processed_pseudogene Homo_sapiens 0 396
ENST00000531034 PTP4A1P6-001 transcribed_processed_pseudogene Homo_sapiens 0 488
ENST00000554127 RP11-395B20.2-001 processed_pseudogene Homo_sapiens 5.60519e-45 183
ENST00000578299 PTP4A1-005 protein_coding Homo_sapiens 0 219

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