C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: small ArfGAP 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026155 Smap1 10090 - 1:23844846-23922317 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027339 Smap1-001 23845625-23922317 protein_coding
  ENSMUST00000129254 Smap1-003 23846296-23909689 protein_coding
  ENSMUST00000133398 Smap1-004 23848795-23891994 retained_intron
  ENSMUST00000136506 Smap1-006 23846178-23847777 processed_transcript
  ENSMUST00000141330 Smap1-005 23848533-23909703 processed_transcript
  ENSMUST00000148710 Smap1-007 23848280-23869974 processed_transcript
  ENSMUST00000149737 Smap1-002 23844846-23909736 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027339ENSMUST00000129254ENSMUST00000136506ENSMUST00000141330ENSMUST00000148710ENSMUST00000149737
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027339 15.591±2.31 11.886±2.01 20.846±1.52 20.628±5.45 7.830±1.42 26.569±6.76 4.414±0.46 17.093±3.02 7.440±3.53 12.632±2.49 1.186±0.00 19.639±8.31 14.697±5.11 46.814±4.83
ENSMUST00000129254 7.858±2.06 10.541±3.84 N/A 25.352±0.00 7.296±1.61 7.381±0.77 N/A N/A 4.032±0.86 8.033±1.54 N/A 43.074±0.00 46.706±13.86 85.698±11.91
ENSMUST00000136506 N/A N/A N/A N/A N/A N/A 7.084±2.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141330 N/A N/A N/A 41.642±0.00 N/A N/A N/A N/A N/A N/A N/A 11.414±0.00 44.219±11.14 N/A
ENSMUST00000148710 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.409±0.00 N/A
ENSMUST00000149737 N/A N/A N/A N/A N/A N/A N/A 9.263±0.52 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053Y CIL_00053Y_0002 CGP 1:23366424-23849158
CIL_00053X CIL_00053X_0002 CGP 1:23761753-23922317
CIL_0002SP CIL_0002SP_0002 CGP 1:23844846-24005656

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0008060 IDA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0030276 IDA clathrin binding
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IDA:IEA positive regulation of GTPase activity
GO:0045648 IDA positive regulation of erythrocyte differentiation
GO:2000369 IDA regulation of clathrin-mediated endocytosis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000031302 smap1 stromal membrane-associated protein 1 protein_coding Danio_rerio
ENSG00000112305 SMAP1 small ArfGAP 1 protein_coding Homo_sapiens

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