C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small ArfGAP 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129254 Smap1-003 ENSMUSG00000026155 10090 - 1:23846296-23909689 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000129254
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000129254 7.858±2.06 10.541±3.84 25.352±0.00 7.296±1.61 7.381±0.77 4.032±0.86 8.033±1.54 43.074±0.00 46.706±13.86 85.698±11.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053Y CIL_00053Y_0002 CGP 1:23366424-23849158
CIL_00053X CIL_00053X_0002 CGP 1:23761753-23922317
CIL_0002SP CIL_0002SP_0002 CGP 1:23844846-24005656

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0008060 IDA ARF GTPase activator activity
GO:0030276 IDA clathrin binding
GO:0043547 IDA positive regulation of GTPase activity
GO:0045648 IDA positive regulation of erythrocyte differentiation
GO:2000369 IDA regulation of clathrin-mediated endocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230053 B3GAT2-001 protein_coding Homo_sapiens 0 399
ENST00000316999 SMAP1-004 protein_coding Homo_sapiens 0 1609
ENST00000370452 SMAP1-003 protein_coding Homo_sapiens 0 1397
ENST00000370455 SMAP1-005 protein_coding Homo_sapiens 0 1116
ENST00000445046 SMAP1-002 protein_coding Homo_sapiens 5e-24 115
ENST00000615536 B3GAT2-201 protein_coding Homo_sapiens 0 399
ENST00000619054 SMAP1-201 protein_coding Homo_sapiens 0 1116

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