C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small ArfGAP 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027339 Smap1-001 ENSMUSG00000026155 10090 - 1:23845625-23922317 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027339
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027339 15.591±2.31 11.886±2.01 20.846±1.52 20.628±5.45 7.830±1.42 26.569±6.76 4.414±0.46 17.093±3.02 7.440±3.53 12.632±2.49 1.186±0.00 19.639±8.31 14.697±5.11 46.814±4.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053Y CIL_00053Y_0002 CGP 1:23366424-23849158
CIL_00053X CIL_00053X_0002 CGP 1:23761753-23922317
CIL_0002SP CIL_0002SP_0002 CGP 1:23844846-24005656

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0008060 IDA ARF GTPase activator activity
GO:0008270 IEA zinc ion binding
GO:0030276 IDA clathrin binding
GO:0032312 IEA regulation of ARF GTPase activity
GO:0043547 IDA:IEA positive regulation of GTPase activity
GO:0045648 IDA positive regulation of erythrocyte differentiation
GO:2000369 IDA regulation of clathrin-mediated endocytosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230053 B3GAT2-001 protein_coding Homo_sapiens 0 966
ENST00000316999 SMAP1-004 protein_coding Homo_sapiens 0 2612
ENST00000370452 SMAP1-003 protein_coding Homo_sapiens 0 1661
ENST00000370455 SMAP1-005 protein_coding Homo_sapiens 0 1853
ENST00000445046 SMAP1-002 protein_coding Homo_sapiens 5e-24 115
ENST00000615536 B3GAT2-201 protein_coding Homo_sapiens 0 966
ENST00000619054 SMAP1-201 protein_coding Homo_sapiens 0 1853

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