C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small ArfGAP 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141330 Smap1-005 ENSMUSG00000026155 10090 - 1:23848533-23909703 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaENSMUST00000141330
Transcript ID Brain Ovary Placenta
ENSMUST00000141330 41.642±0.00 11.414±0.00 44.219±11.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053Y CIL_00053Y_0002 CGP 1:23366424-23849158
CIL_00053X CIL_00053X_0002 CGP 1:23761753-23922317
CIL_0002SP CIL_0002SP_0002 CGP 1:23844846-24005656

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230053 B3GAT2-001 protein_coding Homo_sapiens 9.80909e-45 187
ENST00000316999 SMAP1-004 protein_coding Homo_sapiens 0 568
ENST00000370452 SMAP1-003 protein_coding Homo_sapiens 0 568
ENST00000370455 SMAP1-005 protein_coding Homo_sapiens 0 1177
ENST00000439432 SMAP1-001 protein_coding Homo_sapiens 0 372
ENST00000445046 SMAP1-002 protein_coding Homo_sapiens 0 230
ENST00000615536 B3GAT2-201 protein_coding Homo_sapiens 0.000000003 69
ENST00000619054 SMAP1-201 protein_coding Homo_sapiens 0 1177

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