C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: obscurin-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026211 Obsl1 10090 - 1:75479310-75506452 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000113565 Obsl1-010 75496336-75506361 protein_coding
  ENSMUST00000113567 Obsl1-001 75485825-75506361 protein_coding
  ENSMUST00000127507 Obsl1-005 75496337-75503680 retained_intron
  ENSMUST00000129403 Obsl1-004 75501672-75506361 retained_intron
  ENSMUST00000132252 Obsl1-006 75490849-75493067 protein_coding
  ENSMUST00000138352 Obsl1-008 75492395-75493041 retained_intron
  ENSMUST00000145306 Obsl1-003 75501672-75506452 retained_intron
  ENSMUST00000145382 Obsl1-009 75490969-75491811 retained_intron
  ENSMUST00000150293 Obsl1-007 75491358-75492631 processed_transcript
  ENSMUST00000154636 Obsl1-011 75486851-75487802 retained_intron
  ENSMUST00000155084 Obsl1-012 75490534-75505641 protein_coding
  ENSMUST00000156499 Obsl1-002 75479310-75487233 retained_intron
  ENSMUST00000156705 Obsl1-014 75487223-75488078 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113565ENSMUST00000113567ENSMUST00000127507ENSMUST00000145306ENSMUST00000155084
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113565 4.672±0.00 6.434±0.19 2.144±0.00 5.603±0.14 1.467±0.00 1.139±0.22 N/A 0.675±0.16 1.651±1.29 1.955±0.80 N/A 33.999±7.88 27.151±12.34 N/A
ENSMUST00000113567 2.843±1.65 3.926±1.04 2.526±0.59 3.036±0.15 2.103±0.64 0.625±0.15 7.624±2.37 0.328±0.05 0.635±0.59 1.523±0.15 3.170±0.84 47.533±15.12 12.761±5.07 5.643±0.50
ENSMUST00000127507 N/A N/A N/A N/A 0.737±0.00 N/A N/A 0.718±0.05 1.071±0.82 N/A N/A 23.981±0.00 16.476±0.00 N/A
ENSMUST00000145306 5.533±0.00 30.069±9.77 2.281±0.00 7.729±0.00 4.536±0.80 2.032±0.32 N/A 0.850±0.18 0.915±0.79 2.516±0.66 N/A 62.130±13.07 N/A N/A
ENSMUST00000155084 4.225±2.89 5.354±1.16 3.364±0.48 4.751±0.11 3.294±0.50 0.895±0.20 6.359±0.85 0.560±0.10 1.542±1.03 1.860±0.09 1.821±0.23 27.633±4.19 24.822±12.63 4.216±2.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_00082R CIL_00082R_0002 VISTA 1:75469003-76073592

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 ISS microtubule cytoskeleton organization
GO:0003674 ND molecular_function
GO:0005737 ISS cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005813 ISS centrosome
GO:0007030 IEA Golgi organization
GO:0007088 ISS regulation of mitosis
GO:0034067 IEA protein localization to Golgi apparatus
GO:0050775 IEA positive regulation of dendrite morphogenesis
GO:1990393 ISS 3M complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003684 obsl1a obscurin-like 1a protein_coding Danio_rerio
ENSDARG00000077388 obsl1b obscurin-like 1b protein_coding Danio_rerio
ENSG00000124006 OBSL1 obscurin-like 1 protein_coding Homo_sapiens

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