C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: obscurin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113567 Obsl1-001 ENSMUSG00000026211 10090 - 1:75485825-75506361 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113567
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113567 2.843±1.65 3.926±1.04 2.526±0.59 3.036±0.15 2.103±0.64 0.625±0.15 7.624±2.37 0.328±0.05 0.635±0.59 1.523±0.15 3.170±0.84 47.533±15.12 12.761±5.07 5.643±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0002 VISTA 1:75047166-75647630
CIL_00082R CIL_00082R_0002 VISTA 1:75469003-76073592

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 ISS microtubule cytoskeleton organization
GO:0003674 ND molecular_function
GO:0005737 ISS cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005813 ISS centrosome
GO:0007030 IEA Golgi organization
GO:0007088 ISS regulation of mitosis
GO:0034067 IEA protein localization to Golgi apparatus
GO:0050775 IEA positive regulation of dendrite morphogenesis
GO:1990393 ISS 3M complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000289656 OBSL1-003 protein_coding Homo_sapiens 0 2167
ENST00000373873 OBSL1-002 protein_coding Homo_sapiens 0 3374
ENST00000373876 OBSL1-001 protein_coding Homo_sapiens 0 5806
ENST00000404537 OBSL1-014 protein_coding Homo_sapiens 0 4220
ENST00000456147 OBSL1-005 protein_coding Homo_sapiens 0 1275
ENST00000465149 OBSL1-004 retained_intron Homo_sapiens 0 3081
ENST00000465589 OBSL1-007 processed_transcript Homo_sapiens 0 590
ENST00000489804 OBSL1-012 retained_intron Homo_sapiens 0 603
ENST00000596474 OBSL1-015 retained_intron Homo_sapiens 0 244
ENST00000603926 OBSL1-016 protein_coding Homo_sapiens 0 4220

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