C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: obscurin-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000124006 OBSL1 9606 - 2:219550729-219571859 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000289656 OBSL1-003 219561747-219571464 protein_coding
  ENST00000373873 OBSL1-002 219561722-219571289 protein_coding
  ENST00000373876 OBSL1-001 219550756-219571241 protein_coding
  ENST00000404537 OBSL1-014 219550742-219571289 protein_coding
  ENST00000456147 OBSL1-005 219555763-219559431 protein_coding
  ENST00000462385 OBSL1-008 219562815-219565379 retained_intron
  ENST00000462534 OBSL1-011 219550729-219552389 retained_intron
  ENST00000465149 OBSL1-004 219550729-219570739 retained_intron
  ENST00000465589 OBSL1-007 219570221-219571492 processed_transcript
  ENST00000472388 OBSL1-010 219556242-219557027 retained_intron
  ENST00000489804 OBSL1-012 219550729-219552714 retained_intron
  ENST00000491370 OBSL1-013 219570458-219571859 processed_transcript
  ENST00000596474 OBSL1-015 219554229-219554772 retained_intron
  ENST00000603926 OBSL1-016 219555166-219571289 protein_coding
  ENST00000604031 OBSL1-017 219555461-219562512 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000289656ENST00000373873ENST00000373876ENST00000404537ENST00000462534ENST00000489804ENST00000603926
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000289656 7.612±0.00 10.992±0.00 N/A 15.134±0.00 18.700±0.00 9.348±0.00 16.798±0.00 12.492±0.00 6.980±0.00 4.391±3.18 9.540±0.00 71.238±35.16 28.282±3.31 19.879±6.28
ENST00000373873 3.743±0.00 N/A 1.974±0.00 4.097±0.00 4.395±1.67 0.578±0.00 5.986±2.18 10.333±6.73 3.635±1.28 2.506±1.10 4.943±1.88 29.004±20.65 18.730±4.10 N/A
ENST00000373876 N/A N/A N/A N/A N/A N/A 0.772±0.00 N/A 0.781±0.00 N/A N/A N/A N/A N/A
ENST00000404537 N/A N/A N/A N/A N/A 1.577±0.00 2.681±2.05 N/A N/A N/A N/A N/A N/A N/A
ENST00000462534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 113.348±0.00
ENST00000489804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 91.879±24.45
ENST00000603926 1.294±0.00 2.036±0.00 0.478±0.00 4.734±0.00 1.500±1.19 1.555±0.00 N/A 6.945±0.00 N/A 1.124±0.00 N/A 21.257±2.48 4.478±0.52 6.703±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_00082R CIL_00082R_0001 VISTA 2:219549147-220152579

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005813 IDA centrosome
GO:0007010 NAS cytoskeleton organization
GO:0007030 IMP Golgi organization
GO:0007088 IMP regulation of mitosis
GO:0008093 NAS cytoskeletal adaptor activity
GO:0014704 TAS intercalated disc
GO:0030018 TAS Z disc
GO:0031430 TAS M band
GO:0034067 IMP protein localization to Golgi apparatus
GO:0048471 TAS perinuclear region of cytoplasm
GO:0050775 IMP positive regulation of dendrite morphogenesis
GO:0055003 NAS cardiac myofibril assembly
GO:1990393 IDA 3M complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000003684 obsl1a obscurin-like 1a protein_coding Danio_rerio
ENSDARG00000077388 obsl1b obscurin-like 1b protein_coding Danio_rerio
ENSMUSG00000026211 Obsl1 obscurin-like 1 protein_coding Mus_musculus

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