C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026240 Cops7b 10090 + 1:86582904-86609375 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027446 Cops7b-201 86587100-86606500 protein_coding
  ENSMUST00000121534 Cops7b-001 86582904-86609375 protein_coding
  ENSMUST00000122884 Cops7b-002 86587142-86606978 nonsense_mediated_decay
  ENSMUST00000127219 Cops7b-004 86596740-86601164 processed_transcript
  ENSMUST00000138280 Cops7b-003 86587131-86606326 nonsense_mediated_decay
  ENSMUST00000149542 Cops7b-005 86582938-86589293 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027446ENSMUST00000121534ENSMUST00000122884ENSMUST00000127219ENSMUST00000138280ENSMUST00000149542
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027446 11.475±3.49 11.020±0.68 14.024±4.08 15.908±10.36 8.217±1.83 13.703±3.34 6.931±0.62 7.288±1.56 10.131±3.38 11.532±2.98 3.718±0.67 15.702±6.46 8.550±3.31 10.598±5.53
ENSMUST00000121534 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.194±0.00 N/A N/A N/A
ENSMUST00000122884 N/A 1.596±0.00 N/A 1.444±0.00 1.856±0.00 N/A N/A N/A N/A N/A N/A 1.187±0.27 1.639±0.53 0.367±0.00
ENSMUST00000127219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.524±0.00
ENSMUST00000138280 2.126±0.00 N/A N/A 9.869±3.49 N/A N/A N/A 1.665±0.00 4.681±0.31 N/A 1.199±0.19 4.498±0.00 3.126±0.94 0.328±0.00
ENSMUST00000149542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.567±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0002 VISTA 1:86187174-86788752
CIL_0007WD CIL_0007WD_0002 VISTA 1:86187834-86792789
CIL_0007FL CIL_0007FL_0002 CGP 1:86542994-86609375
CIL_0007FO CIL_0007FO_0002 CGP 1:86582904-86670571

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008180 IBA COP9 signalosome
GO:0010388 IBA cullin deneddylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000144524 COPS7B COP9 signalosome subunit 7B protein_coding Homo_sapiens

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