C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: COP9 signalosome subunit 7B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000144524 COPS7B 9606 + 2:231781671-231809254 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000350033 COPS7B-001 231786414-231809253 protein_coding
  ENST00000357490 COPS7B-011 231786436-231791762 nonsense_mediated_decay
  ENST00000373608 COPS7B-002 231786448-231809253 protein_coding
  ENST00000409091 COPS7B-023 231781685-231807695 protein_coding
  ENST00000409295 COPS7B-006 231781678-231807815 protein_coding
  ENST00000410017 COPS7B-014 231786445-231808723 protein_coding
  ENST00000410024 COPS7B-015 231781671-231807724 protein_coding
  ENST00000412591 COPS7B-009 231786434-231798943 protein_coding
  ENST00000412922 COPS7B-005 231786445-231808764 nonsense_mediated_decay
  ENST00000413197 COPS7B-003 231786434-231809247 nonsense_mediated_decay
  ENST00000432387 COPS7B-012 231786436-231791808 nonsense_mediated_decay
  ENST00000436564 COPS7B-020 231788689-231796145 nonsense_mediated_decay
  ENST00000449174 COPS7B-022 231796187-231808724 protein_coding
  ENST00000449784 COPS7B-017 231781707-231796311 nonsense_mediated_decay
  ENST00000450501 COPS7B-010 231786435-231791786 nonsense_mediated_decay
  ENST00000452375 COPS7B-018 231781707-231791169 nonsense_mediated_decay
  ENST00000461350 COPS7B-007 231789654-231808723 retained_intron
  ENST00000466901 COPS7B-019 231781708-231791976 retained_intron
  ENST00000474042 COPS7B-021 231791604-231807797 retained_intron
  ENST00000479430 COPS7B-016 231781707-231788927 retained_intron
  ENST00000488111 COPS7B-008 231793516-231808722 retained_intron
  ENST00000492423 COPS7B-013 231786445-231789149 retained_intron
  ENST00000611614 COPS7B-201 231781671-231809254 protein_coding
  ENST00000620578 COPS7B-202 231786383-231809254 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000350033ENST00000410017ENST00000410024ENST00000412922ENST00000413197ENST00000449174ENST00000461350ENST00000488111ENST00000492423ENST00000611614
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000350033 1.979±0.00 N/A N/A 2.958±1.61 2.009±0.00 1.688±0.00 N/A N/A 0.829±0.00 1.106±0.00 N/A 2.664±2.00 2.171±0.18 N/A
ENST00000410017 2.284±0.00 5.468±0.00 N/A N/A 3.406±0.00 2.145±0.00 1.858±0.00 3.659±0.00 1.203±0.00 2.335±0.00 2.798±1.23 6.360±0.51 3.776±0.03 11.650±0.00
ENST00000410024 N/A N/A N/A N/A N/A 1.269±0.00 N/A 0.840±0.00 N/A N/A N/A 0.947±0.00 N/A N/A
ENST00000412922 N/A 4.101±0.00 N/A 6.539±0.00 2.897±0.00 2.406±0.00 2.569±0.00 2.351±0.00 1.759±0.00 3.901±0.00 N/A 6.247±0.99 4.287±0.61 12.418±3.60
ENST00000413197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.213±0.00 N/A
ENST00000449174 N/A N/A N/A N/A N/A 2.258±0.00 N/A N/A N/A N/A N/A 12.727±0.00 8.619±0.00 28.782±0.00
ENST00000461350 N/A N/A 1.243±0.00 N/A 0.448±0.00 0.726±0.00 0.516±0.00 0.246±0.00 N/A 0.832±0.00 N/A 1.295±0.62 N/A N/A
ENST00000488111 N/A N/A 0.594±0.00 N/A 0.666±0.00 N/A N/A 0.625±0.00 1.480±0.00 N/A N/A N/A N/A N/A
ENST00000492423 N/A N/A N/A N/A 2.238±0.00 2.122±0.00 N/A N/A N/A N/A N/A 3.057±0.00 N/A N/A
ENST00000611614 N/A N/A N/A N/A N/A N/A N/A 1.670±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0001 VISTA 2:231361987-231963495
CIL_0007WD CIL_0007WD_0001 VISTA 2:231362545-231967398
CIL_0007FM CIL_0007FM_0001 CGP 2:231706895-231786272
CIL_0007FL CIL_0007FL_0001 CGP 2:231732425-231809254
CIL_0007FO CIL_0007FO_0001 CGP 2:231781671-231926403

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0008180 IEA:IDA COP9 signalosome
GO:0010388 IDA cullin deneddylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000026240 Cops7b COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana) protein_coding Mus_musculus

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