C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 (constitutive photomorphogenic) homolog, subunit 7b (Arabidopsis thaliana)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000138280 Cops7b-003 ENSMUSG00000026240 10090 + 1:86587131-86606326 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000138280
Transcript ID Adipose Brain Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000138280 2.126±0.00 9.869±3.49 1.665±0.00 4.681±0.31 1.199±0.19 4.498±0.00 3.126±0.94 0.328±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0002 VISTA 1:86187174-86788752
CIL_0007WD CIL_0007WD_0002 VISTA 1:86187834-86792789
CIL_0007FL CIL_0007FL_0002 CGP 1:86542994-86609375
CIL_0007FO CIL_0007FO_0002 CGP 1:86582904-86670571

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0008180 IBA COP9 signalosome
GO:0010388 IBA cullin deneddylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000350033 COPS7B-001 protein_coding Homo_sapiens 0 1707
ENST00000357490 COPS7B-011 nonsense_mediated_decay Homo_sapiens 0 326
ENST00000373608 COPS7B-002 protein_coding Homo_sapiens 0 1114
ENST00000409091 COPS7B-023 protein_coding Homo_sapiens 0 907
ENST00000409295 COPS7B-006 protein_coding Homo_sapiens 0 1003
ENST00000410017 COPS7B-014 protein_coding Homo_sapiens 0 1048
ENST00000410024 COPS7B-015 protein_coding Homo_sapiens 0 941
ENST00000412591 COPS7B-009 protein_coding Homo_sapiens 0 425
ENST00000412922 COPS7B-005 nonsense_mediated_decay Homo_sapiens 0 1543
ENST00000413197 COPS7B-003 nonsense_mediated_decay Homo_sapiens 0 2032
ENST00000432387 COPS7B-012 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000436564 COPS7B-020 nonsense_mediated_decay Homo_sapiens 0 209
ENST00000449174 COPS7B-022 protein_coding Homo_sapiens 0 514
ENST00000449784 COPS7B-017 nonsense_mediated_decay Homo_sapiens 0 460
ENST00000450501 COPS7B-010 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000452375 COPS7B-018 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000461350 COPS7B-007 retained_intron Homo_sapiens 0 1048
ENST00000466901 COPS7B-019 retained_intron Homo_sapiens 0 233
ENST00000474042 COPS7B-021 retained_intron Homo_sapiens 0 1003
ENST00000479430 COPS7B-016 retained_intron Homo_sapiens 0 231
ENST00000488111 COPS7B-008 retained_intron Homo_sapiens 0 1640
ENST00000492423 COPS7B-013 retained_intron Homo_sapiens 0 320
ENST00000611614 COPS7B-201 protein_coding Homo_sapiens 0 1565
ENST00000620578 COPS7B-202 protein_coding Homo_sapiens 0 2032

Loading