C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: septin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026276 Sept2 10090 + 1:93478964-93510260 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000027495 Sept2-001 93478964-93510260 protein_coding
  ENSMUST00000112912 Sept2-007 93479108-93500528 protein_coding
  ENSMUST00000129211 Sept2-004 93479059-93500503 protein_coding
  ENSMUST00000131175 Sept2-006 93478993-93500499 protein_coding
  ENSMUST00000136182 Sept2-002 93478990-93499112 protein_coding
  ENSMUST00000142401 Sept2-008 93479223-93499112 protein_coding
  ENSMUST00000149532 Sept2-005 93479220-93499030 protein_coding
  ENSMUST00000150931 Sept2-009 93479473-93500526 protein_coding
  ENSMUST00000152476 Sept2-011 93505193-93507019 retained_intron
  ENSMUST00000152778 Sept2-010 93479021-93497749 retained_intron
  ENSMUST00000153826 Sept2-003 93479035-93497355 protein_coding
  ENSMUST00000157021 Sept2-012 93505568-93507346 protein_coding
  ENSMUST00000168776 Sept2-201 93479061-93509733 protein_coding
  ENSMUST00000172165 Sept2-202 93478993-93509733 protein_coding
  ENSMUST00000179353 Sept2-203 93478993-93509733 protein_coding
  ENSMUST00000188923 Sept2-013 93479059-93482368 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027495ENSMUST00000131175ENSMUST00000150931ENSMUST00000168776ENSMUST00000172165ENSMUST00000179353
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027495 9.012±0.81 5.769±2.09 9.483±0.06 4.631±0.47 5.100±0.00 3.718±1.07 4.479±0.42 3.301±0.79 5.181±1.80 8.396±1.03 1.834±0.22 7.056±0.00 15.558±1.40 N/A
ENSMUST00000131175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 28.341±0.00 N/A N/A
ENSMUST00000150931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 16.136±1.93 N/A N/A
ENSMUST00000168776 N/A N/A N/A N/A N/A 4.402±1.41 N/A N/A 4.335±1.06 N/A 2.011±0.00 12.646±2.75 N/A N/A
ENSMUST00000172165 11.581±0.00 14.064±2.79 17.761±0.42 10.102±4.39 38.229±0.00 12.001±0.00 6.381±1.93 10.567±4.65 9.079±5.58 9.919±0.00 3.774±1.62 34.538±27.77 32.237±15.83 11.500±3.73
ENSMUST00000179353 36.018±4.95 13.259±0.00 52.642±6.36 20.675±1.66 25.612±2.07 12.317±2.31 13.958±1.50 11.033±3.95 20.245±13.88 31.388±4.22 12.543±2.05 31.886±10.31 65.414±5.30 31.676±6.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002JH CIL_0002JH_0002 CGP 1:93405940-93510260
CIL_0002JL CIL_0002JL_0002 CGP 1:93478964-93621976

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000145 IEA exocyst
GO:0000776 IEA kinetochore
GO:0000910 NAS cytokinesis
GO:0002036 IDA regulation of L-glutamate transport
GO:0003924 NAS GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 ISS cytoplasm
GO:0005826 NAS actomyosin contractile ring
GO:0005876 TAS spindle microtubule
GO:0005886 IDA plasma membrane
GO:0005938 TAS cell cortex
GO:0006184 NAS GTP catabolic process
GO:0007049 IEA cell cycle
GO:0007067 IEA mitotic nuclear division
GO:0007224 IMP smoothened signaling pathway
GO:0009986 IDA cell surface
GO:0015629 TAS actin cytoskeleton
GO:0015630 TAS microtubule cytoskeleton
GO:0030234 IDA enzyme regulator activity
GO:0030496 TAS midbody
GO:0031105 IEA septin complex
GO:0031175 IEA neuron projection development
GO:0032880 IDA regulation of protein localization
GO:0032947 IDA protein complex scaffold
GO:0035869 IDA ciliary transition zone
GO:0042384 IMP cilium assembly
GO:0042802 TAS identical protein binding
GO:0042995 IDA cell projection
GO:0045202 IDA synapse
GO:0048471 IEA perinuclear region of cytoplasm
GO:0050790 IDA regulation of catalytic activity
GO:0051258 TAS protein polymerization
GO:0060170 IDA ciliary membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000027590 sept2 septin 2 protein_coding Danio_rerio
ENSG00000168385 SEPT2 septin 2 protein_coding Homo_sapiens

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